5KDM
Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8070527 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2 Family | BRNF1 DID-like | 8047978 | 4005893 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | PurM C-terminal domain-like | 8106396 | 3000696 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Histone | e5kdmA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
B | Histone_1 | e5kdmB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
C | DAXX_histone_binding | e5kdmC1 | A: alpha bundles | X: Death domain-associated protein 6 histone binding domain (From Topology) | H: Death domain-associated protein 6 histone binding domain (From Topology) | T: Death domain-associated protein 6 histone binding domain | F: DAXX_histone_binding | ECOD (1.6) |
D | Tegument_dsDNA | e5kdmD1 | A: a+b two layers | X: Alpha-beta plaits | H: PurM C-terminal domain-like (From Topology) | T: PurM C-terminal domain-like | F: Tegument_dsDNA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
C | 1.20.58.2170 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20920 | Death domain-associated protein 6, histone binding domain (DAXX_hist_bd) | Death domain-associated protein 6, histone binding domain | This domain is found in the mammalian Death domain-associated protein 6 (DAXX) and in similar proteins from animals. DAXX is a transcription corepressor and a histone chaperone that shows specificity for the conserved histone H3.3. This entry represe ... | Domain | |