5J5E
crystal structure of antigen-ERAP1 domain complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5j5ea2 | All alpha proteins | alpha-alpha superhelix | ARM repeat | ERAP1 C-terminal-like | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d5j5ea1 | All beta proteins | Immunoglobulin-like beta-sandwich | Zn aminopeptidase insert domain | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d5j5ea3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1046 | e5j5eA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: KOG1046 | ECOD (1.6) |
A | ERAP1_C_1 | e5j5eA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ERAP1_C_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1910 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 1.25.50.20 | Mainly Alpha | Alpha Horseshoe | Zincin-like fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11838 | ERAP1-like C-terminal domain (ERAP1_C) | ERAP1-like C-terminal domain | This large domain is composed of 16 alpha helices organized as 8 HEAT-like repeats. This domain forms a concave face that faces towards the active site of the peptidase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001930 | Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase | Family | |
IPR042097 | Aminopeptidase N-like , N-terminal domain superfamliy | Homologous Superfamily | |
IPR024571 | ERAP1-like C-terminal domain | Domain | |
IPR027268 | Peptidase M4/M1, CTD superfamily | Homologous Superfamily | |
IPR034016 | Aminopeptidase N-type | Family | |
IPR014782 | Peptidase M1, membrane alanine aminopeptidase | Domain | |
IPR045357 | Aminopeptidase N-like , N-terminal domain | Domain | |
IPR050344 | Peptidase M1 family aminopeptidases | Family |