Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth Y]SCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
B [auth Y]SCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
B [auth Y]SCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
B [auth Y]SCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth X]GTP_EFTU_D2_1e5hxbX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_1ECOD (1.6)
A [auth X]GTP_EFTU_D3_1e5hxbX2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: GTP_EFTU_D3_1ECOD (1.6)
F [auth A]GTP_EFTU_D2_1e5hxbA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_1ECOD (1.6)
F [auth A]GTP_EFTU_D3_1e5hxbA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: GTP_EFTU_D3_1ECOD (1.6)
B [auth Y]CPSF_A_Ne5hxbY2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
B [auth Y]MMS1_N_Ce5hxbY1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
B [auth Y]MMS1_N_Ne5hxbY4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
B [auth Y]CPSF_A_Ce5hxbY3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
D [auth B]CPSF_A_Ne5hxbB4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
D [auth B]MMS1_N_Ce5hxbB3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
D [auth B]MMS1_N_Ne5hxbB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
D [auth B]CPSF_A_Ce5hxbB2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
C [auth Z]LON_substr_bdge5hxbZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: LON_substr_bdgECOD (1.6)
C [auth Z]Yippee-Mis18_1e5hxbZ2 A: beta complex topologyX: ETN0001 domain-like (From Homology)H: ETN0001 domain-likeT: Mss4-likeF: Yippee-Mis18_1ECOD (1.6)
E [auth C]LON_substr_bdge5hxbC2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: LON_substr_bdgECOD (1.6)
E [auth C]Yippee-Mis18_1e5hxbC1 A: beta complex topologyX: ETN0001 domain-like (From Homology)H: ETN0001 domain-likeT: Mss4-likeF: Yippee-Mis18_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth X],
F [auth A]
PF22594GTP-eEF1A C-terminal domain-like (GTP-eEF1A_C)GTP-eEF1A C-terminal domain-likeThis entry represents a beta-barrel domain that is found C-terminal in homologues of elongation factor eEF1A.Domain
A [auth X],
F [auth A]
PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
B [auth Y],
D [auth B]
PF10433Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N)Mono-functional DNA-alkylating methyl methanesulfonate N-term- Repeat
B [auth Y],
D [auth B]
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
C [auth Z],
E [auth C]
PF02190ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg)ATP-dependent protease La (LON) substrate-binding domain- Family
C [auth Z],
E [auth C]
PF03226Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18)Yippee zinc-binding/DNA-binding /Mis18, centromere assemblyThis family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ...This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of a small complex with Mis18-binding protein. Mis18-alpha is found to interact with DNA de-methylases through a Leu-rich region located at its carboxyl terminus [5]. This entry also includes the CULT domain proteins such as Cereblon [6].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth X],
F [auth A]
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A
B [auth Y],
D [auth B]
DNA damage-binding protein 1
C [auth Z],
E [auth C]
Protein cereblon

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth X],
F [auth A]
IPR050100Translation factor GTPase superfamily membersFamily
A [auth X],
F [auth A]
IPR000795Translational (tr)-type GTP-binding domainDomain
A [auth X],
F [auth A]
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
A [auth X],
F [auth A]
IPR031157Tr-type G domain, conserved siteConserved Site
A [auth X],
F [auth A]
IPR004161Translation elongation factor EFTu-like, domain 2Domain
A [auth X],
F [auth A]
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
A [auth X],
F [auth A]
IPR004160Translation elongation factor EFTu/EF1A, C-terminalDomain
A [auth X],
F [auth A]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth Y],
D [auth B]
IPR018846Cleavage/polyadenylation specificity factor, A subunit, N-terminalDomain
B [auth Y],
D [auth B]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth Y],
D [auth B]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth Y],
D [auth B]
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
B [auth Y],
D [auth B]
IPR050358RSE1/DDB1/CFT1/CPSF1Family
C [auth Z],
E [auth C]
IPR015947PUA-like superfamilyHomologous Superfamily
C [auth Z],
E [auth C]
IPR046336Lon protease, N-terminal domain superfamilyHomologous Superfamily
C [auth Z],
E [auth C]
IPR004910Yippee/Mis18/CereblonDomain
C [auth Z],
E [auth C]
IPR003111Lon protease, N-terminal domainDomain
C [auth Z],
E [auth C]
IPR034750CULT domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth X],
F [auth A]
PharosP15170
B [auth Y],
D [auth B]
PharosQ16531
C [auth Z],
E [auth C]
PharosQ96SW2