5FUR
Structure of human TFIID-IIA bound to core promoter DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TATA-box binding protein-like | 8036293 | 3000705 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TATA-box binding protein-like | 8036295 | 3000705 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Transcription factor IIA (TFIIA), alpha-helical domain | 8037001 | 3001887 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Transcription factor IIA (TFIIA), beta-barrel domain | 8037002 | 3001281 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Transcription factor IIA (TFIIA), beta-barrel domain | 8037007 | 3001281 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Transcription factor IIA (TFIIA), alpha-helical domain | 8037005 | 3001887 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054049 | 3000142 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TBP | e5furA1 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: TBP | ECOD (1.6) |
B | TFIIA_N | e5furB1 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: TFIIA_N | ECOD (1.6) |
C | TFIIA_C | e5furC1 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: TFIIA_C | ECOD (1.6) |
D | TFIIA_gamma_C | e5furD2 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: TFIIA_gamma_C | ECOD (1.6) |
D | TFIIA_gamma_N | e5furD1 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: TFIIA_gamma_N | ECOD (1.6) |
G | DUF3591_1st | e5furG1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: TFIID subunits TAF1-TAF7 | F: DUF3591_1st | ECOD (1.6) |
G | DUF3591_2nd | e5furG2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DUF3591_2nd | ECOD (1.6) |
H | TAFII55_N | e5furH1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: TFIID subunits TAF1-TAF7 | F: TAFII55_N | ECOD (1.6) |
I | Peptidase_M1_2 | e5furI2 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: Peptidase_M1_2 | ECOD (1.6) |
I | CLASP_N_2 | e5furI3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CLASP_N_2 | ECOD (1.6) |
I | Peptidase_M1 | e5furI1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M1 | ECOD (1.6) |
J | TAF6_C | e5furJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TAF6_C | ECOD (1.6) |
K | TAF6_C | e5furK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TAF6_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) (TBP) | Transcription factor TFIID (or TATA-binding protein, TBP) | - | Domain | |
PF03153 | Transcription factor IIA, alpha/beta subunit (TFIIA) | Transcription factor IIA, alpha/beta subunit | - | Family | |
PF02751 | Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C) | Transcription initiation factor IIA, gamma subunit | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA b ... | Domain | |
PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain (TFIIA_gamma_N) | Transcription initiation factor IIA, gamma subunit, helical domain | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA ... | Domain | |
PF04658 | TAFII55 protein conserved region (TAFII55_N) | TAFII55 protein conserved region | - | Family | |