5EYA
TRIM25 RING domain in complex with Ubc13-Ub conjugate
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5eyaa_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d5eyab_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E [auth C] | d5eyac_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F [auth D] | d5eyad_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00179 | e5eyaA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
D [auth B] | PF00179 | e5eyaB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
B [auth F] | PF13445 | e5eyaF1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF13445 | ECOD (1.6) |
C [auth G] | PF13445 | e5eyaG1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF13445 | ECOD (1.6) |
E [auth C] | PF00240 | e5eyaC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
F [auth D] | PF00240 | e5eyaD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth F] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
C [auth G] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
B [auth F], C [auth G] | PF13445 | RING-type zinc-finger (zf-RING_UBOX) | RING-type zinc-finger | This zinc-finger is a typical RING-type of plant ubiquitin ligases [1]. | Domain |
E [auth C], F [auth D] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |