5ECG
Crystal structure of the BRCT domains of 53BP1 in complex with p53 and H2AX-pSer139 (gammaH2AX)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | BRCT domain-like | 8040906 | 3000159 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | BRCT domain-like | 8040905 | 3000159 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | BRCT domain-like | 8040906 | 3000159 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | BRCT domain-like | 8040905 | 3000159 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | P53 | e5ecgB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
A | P53 | e5ecgA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
C | PTCB-BRCT | e5ecgC2 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: PTCB-BRCT | ECOD (1.6) |
C | KOG3548_3rd | e5ecgC1 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: KOG3548_3rd | ECOD (1.6) |
D | PTCB-BRCT | e5ecgD2 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: PTCB-BRCT | ECOD (1.6) |
D | KOG3548_3rd | e5ecgD1 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: KOG3548_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.40.720 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.720 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 3.40.50.10190 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | BRCT domain | CATH (4.3.0) |
D | 3.40.50.10190 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | BRCT domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00870 | P53 DNA-binding domain (P53) | P53 DNA-binding domain | This family contains one anomalous member, viz: Zea mays (Q6JAD8). This sequence is identical to human P53 and would appear to be a a human contaminant within the Zea mays sampling effort. | Domain | |
PF18428 | BRCA1 C Terminus (BRCT) domain (BRCT_3) | BRCA1 C Terminus (BRCT) domain | Brca1 C-terminal (BRCT) domains are a common protein-protein interaction regions in proteins involved in the DNA damage response and DNA repair [1,2]. For example 53BP1 which plays multiple roles in mammalian DNA damage repair, has a C-terminal tande ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012346 | p53/RUNT-type transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR002117 | p53 tumour suppressor family | Family | |
IPR013872 | p53 transactivation domain | Domain | |
IPR036674 | p53-like tetramerisation domain superfamily | Homologous Superfamily | |
IPR011615 | p53, DNA-binding domain | Domain | |
IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR010991 | p53, tetramerisation domain | Domain | |
IPR040926 | Cellular tumor antigen p53, transactivation domain 2 | Domain | |
IPR047252 | TP53-binding protein 1-like | Family | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR001357 | BRCT domain | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR047249 | TP53-binding protein 1-like, first BRCT domain | Domain | |
IPR047250 | TP53-binding protein 1-like, second BRCT domain | Domain | |
IPR015125 | Tumour suppressor p53-binding protein-1 Tudor domain | Domain |