5C11

Crystal Structure of Jarid1a PHD finger bound to histone H3C4me3 peptide


ChainDomainClassArchitectureTopologyHomology
A3.30.40.10 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Zinc/RING finger domain, C3HC4 (zinc finger)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
BPF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
APF02373JmjC domain, hydroxylase (JmjC)JmjC domain, hydroxylaseThe JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ...The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation [5].
Domain
APF00628PHD-finger (PHD)PHD-fingerPHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].Domain
APF02928C5HC2 zinc finger (zf-C5HC2)C5HC2 zinc fingerPredicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [1]. This domain may have a DNA binding function.Domain
APF02375jmjN domain (JmjN)jmjN domain- Family
APF08429PLU-1-like protein (PLU-1)PLU-1-like protein- Family
APF01388ARID/BRIGHT DNA binding domain (ARID)ARID/BRIGHT DNA binding domainThis domain is know as ARID for AT-Rich Interaction Domain [1], and also known as the BRIGHT domain [3].Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
BH3 peptide
ALysine-specific demethylase 5A