Crystal Structure of Jarid1a PHD finger bound to histone H3C4me3 peptide
Huang, J., Li, H.(2015) Nat Commun 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 5A | A | 52 | Homo sapiens | Mutation(s): 0  Gene Names: KDM5A, JARID1A, RBBP2, RBP2 EC: 1.14.11 (PDB Primary Data), 1.14.11.67 (UniProt) | ![]() |
Find proteins for P29375 (Homo sapiens) Explore P29375  Go to UniProtKB:  P29375 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
H3 peptide | B | 10 | synthetic construct | Mutation(s): 0  | ![]() |
Find proteins for P68431 (Homo sapiens) Explore P68431  Go to UniProtKB:  P68431 | |||||
NIH Common Fund Data Resources | |||||
GTEx  ENSG00000197409 | |||||
Protein Feature ViewExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
4WQ Query on 4WQ | B | L-PEPTIDE LINKING | C10 H21 N O2 | ALA |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 108.91 | α = 90 |
b = 108.91 | β = 90 |
c = 108.91 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
HKL-2000 | data scaling |
MOLREP | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |