4WHV
E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
K [auth G] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | UQ_con | e4whvB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
D [auth E] | UQ_con | e4whvE1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
E [auth H] | UQ_con | e4whvH1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
H [auth K] | UQ_con | e4whvK1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B [auth C] | zf-C3HC4_4 | e4whvC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
C [auth D] | zf-C3HC4_4 | e4whvD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
F [auth I] | zf-C3HC4_4 | e4whvI1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
G [auth J] | zf-C3HC4_4 | e4whvJ1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
I [auth A] | ubiquitin_1 | e4whvA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
J [auth F] | ubiquitin_1 | e4whvF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
K [auth G] | ubiquitin_1 | e4whvG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
L | ubiquitin_1 | e4whvL1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth E], E [auth H], H [auth K] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
B [auth C], C [auth D], F [auth I], G [auth J] | PF13920 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) | Zinc finger, C3HC4 type (RING finger) | - | Domain |
I [auth A], J [auth F], K [auth G], L | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth B], D [auth E], E [auth H], H [auth K] | P61088 | : |
B [auth C], C [auth D], F [auth I], G [auth J] | O76064 | : |
I [auth A], J [auth F], K [auth G], L | P0CG47 | :