4V7Q
Atomic model of an infectious rotavirus particle
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth AA] | SCOP2 Family | Rotavirus core (VP2) | 8046844 | 4005324 | SCOP2 (2022-06-29) |
A [auth AA] | SCOP2 Superfamily | Reovirus inner layer core protein p3 | 8094216 | 3001935 | SCOP2 (2022-06-29) |
B [auth AB] | SCOP2B Superfamily | Reovirus inner layer core protein p3 | 8094216 | 3001935 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth AA] | PF05087 | e4v7qAA1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF05087 | ECOD (1.6) |
B [auth AB] | PF05087 | e4v7qAB1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF05087 | ECOD (1.6) |
C [auth AC] | PF00980 | e4v7qAC2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
C [auth AC] | PF00980 | e4v7qAC1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
D [auth AD] | PF00980 | e4v7qAD2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
D [auth AD] | PF00980 | e4v7qAD1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
E [auth AE] | PF00980 | e4v7qAE2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
E [auth AE] | PF00980 | e4v7qAE1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
F [auth AF] | PF00980 | e4v7qAF2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
F [auth AF] | PF00980 | e4v7qAF1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
G [auth AG] | PF00980 | e4v7qAG2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
G [auth AG] | PF00980 | e4v7qAG1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
H [auth AH] | PF00980 | e4v7qAH2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
H [auth AH] | PF00980 | e4v7qAH1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
I [auth AI] | PF00980 | e4v7qAI2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
I [auth AI] | PF00980 | e4v7qAI1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
J [auth AJ] | PF00980 | e4v7qAJ2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
J [auth AJ] | PF00980 | e4v7qAJ1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
K [auth AK] | PF00980 | e4v7qAK2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
K [auth AK] | PF00980 | e4v7qAK1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
L [auth AL] | PF00980 | e4v7qAL2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
L [auth AL] | PF00980 | e4v7qAL1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
M [auth AM] | PF00980 | e4v7qAM2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
M [auth AM] | PF00980 | e4v7qAM1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
N [auth AN] | PF00980 | e4v7qAN2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
N [auth AN] | PF00980 | e4v7qAN1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
O [auth AO] | PF00980 | e4v7qAO2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
O [auth AO] | PF00980 | e4v7qAO1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
AA [auth BP] | PF00434 | e4v7qBP1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
AA [auth BP] | PF00434 | e4v7qBP2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
BA [auth BQ] | PF00434 | e4v7qBQ2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
BA [auth BQ] | PF00434 | e4v7qBQ1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
P [auth BA] | PF00434 | e4v7qBA2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
P [auth BA] | PF00434 | e4v7qBA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Q [auth BF] | PF00434 | e4v7qBF1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Q [auth BF] | PF00434 | e4v7qBF2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
R [auth BG] | PF00434 | e4v7qBG2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
R [auth BG] | PF00434 | e4v7qBG1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
S [auth BH] | PF00434 | e4v7qBH2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
S [auth BH] | PF00434 | e4v7qBH1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
T [auth BI] | PF00434 | e4v7qBI2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
T [auth BI] | PF00434 | e4v7qBI1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
U [auth BJ] | PF00434 | e4v7qBJ2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
U [auth BJ] | PF00434 | e4v7qBJ1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
V [auth BK] | PF00434 | e4v7qBK1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
V [auth BK] | PF00434 | e4v7qBK2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
W [auth BL] | PF00434 | e4v7qBL1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
W [auth BL] | PF00434 | e4v7qBL2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
X [auth BM] | PF00434 | e4v7qBM2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
X [auth BM] | PF00434 | e4v7qBM1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Y [auth BN] | PF00434 | e4v7qBN1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Y [auth BN] | PF00434 | e4v7qBN2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Z [auth BO] | PF00434 | e4v7qBO2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Z [auth BO] | PF00434 | e4v7qBO1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
CA [auth BX] | PF00426 | e4v7qBX3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
CA [auth BX] | PF17477 | e4v7qBX1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
CA [auth BX] | PF17478 | e4v7qBX2 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
DA [auth BY] | PF00426 | e4v7qBY3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
DA [auth BY] | PF17477 | e4v7qBY1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
DA [auth BY] | PF17478 | e4v7qBY2 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
EA [auth BZ] | PF17477 | e4v7qBZ2 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
EA [auth BZ] | PF17478 | e4v7qBZ1 | A: alpha complex topology | X: Helical domain in outer capsid protein VP4 (From Topology) | H: Helical domain in outer capsid protein VP4 (From Topology) | T: Helical domain in outer capsid protein VP4 | F: PF17478 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth AA], B [auth AB] | PF05087 | Rotavirus VP2 protein (Rota_VP2) | Rotavirus VP2 protein | - | Family |
PF00980 | Rotavirus major capsid protein VP6 (Rota_Capsid_VP6) | Rotavirus major capsid protein VP6 | - | Family | |
PF00434 | Glycoprotein VP7 (VP7) | Glycoprotein VP7 | - | Family | |
CA [auth BX], DA [auth BY], EA [auth BZ] | PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
CA [auth BX], DA [auth BY], EA [auth BZ] | PF17477 | Rotavirus VP4 membrane interaction domain (Rota_VP4_MID) | Rotavirus VP4 membrane interaction domain | This entry represents the VP4 membrane interaction domain. | Domain |
CA [auth BX], DA [auth BY], EA [auth BZ] | PF17478 | Rotavirus VP4 helical domain (VP4_helical) | Rotavirus VP4 helical domain | - | Domain |