4UFR

Structure of the ectodomain of LGR5 in complex with R-spondin-2 (Fu1Fu2)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4ufrb_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Growth factor receptor domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4ufrd_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Growth factor receptor domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Furin-like repeat	8044724	4004103	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Growth factor receptor domain-like	8052292	3000398	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Growth factor receptor domain-like	8052292	3000398	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	LRR_8_1	e4ufrC1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_1	ECOD (1.6)
A	LRR_8_3	e4ufrA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_3	ECOD (1.6)
B	Furin-like_2	e4ufrB1	A: few secondary structure elements	X: EGF-like	H: Growth factor receptor domain (From Topology)	T: Growth factor receptor domain	F: Furin-like_2	ECOD (1.6)
D	Furin-like_2	e4ufrD1	A: few secondary structure elements	X: EGF-like	H: Growth factor receptor domain (From Topology)	T: Growth factor receptor domain	F: Furin-like_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
A	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
B	2.10.220.10	Mainly Beta	Ribbon	Hormone Receptor, Insulin-like Growth Factor Receptor 1	Chain A domain 2	CATH (4.3.0)
D	2.10.220.10	Mainly Beta	Ribbon	Hormone Receptor, Insulin-like Growth Factor Receptor 1	Chain A domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
A, C	PF01462	Leucine rich repeat N-terminal domain (LRRNT)	Leucine rich repeat N-terminal domain	-	Family
A, C	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
B, D	PF15913	Furin-like repeat, cysteine-rich (Furin-like_2)	Furin-like repeat, cysteine-rich	The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 5	molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity peptide receptor activity G protein-coupled peptide receptor activity protein-hormone receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction developmental process multicellular organismal process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction developmental process multicellular organismal process epithelium development cell population proliferation tube development morphogenesis of an epithelium tissue development renal system development epithelial cell proliferation involved in renal tubule morphogenesis tissue morphogenesis anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure development renal tubule development epithelial tube morphogenesis epithelial cell proliferation renal tubule morphogenesis system development sexual reproduction cellular developmental process reproductive process oogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation cell differentiation germ cell development oocyte differentiation ear development sensory organ development inner ear development animal organ development regulation of cell population proliferation epidermis development molting cycle process hair cycle skin development skin epidermis development hair follicle development molting cycle hair cycle process positive regulation of cell communication positive regulation of signal transduction regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of Wnt signaling pathway Wnt signaling pathway positive regulation of cellular process positive regulation of canonical Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling	membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system Golgi apparatus subcompartment organelle subcompartment membrane trans-Golgi network membrane trans-Golgi network membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system Golgi apparatus subcompartment organelle subcompartment membrane trans-Golgi network membrane trans-Golgi network organelle membrane cell periphery plasma membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B, D	R-SPONDIN-2	protein binding binding signaling receptor binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	developmental process multicellular organismal process regulation of biological process regulation of animal organ morphogenesis regulation of developmental process regulation of odontogenesis of dentin-containing tooth negative regulation of developmental process regulation of odontogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ development biological regulation negative regulation of biological process negative regulation of odontogenesis anatomical structure morphogenesis developmental process multicellular organismal process regulation of biological process regulation of animal organ morphogenesis regulation of developmental process regulation of odontogenesis of dentin-containing tooth negative regulation of developmental process regulation of odontogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ development biological regulation negative regulation of biological process negative regulation of odontogenesis anatomical structure morphogenesis negative regulation of odontogenesis of dentin-containing tooth anatomical structure development animal organ morphogenesis negative regulation of animal organ morphogenesis regulation of multicellular organismal process negative regulation of multicellular organismal process regulation of anatomical structure morphogenesis cellular developmental process ossification cell differentiation cellular process osteoblast differentiation lung growth developmental growth tube development growth respiratory tube development organ growth multicellular organism development lung development respiratory system development system development trachea cartilage morphogenesis connective tissue development trachea cartilage development trachea morphogenesis tissue development tissue morphogenesis skeletal system development trachea development cartilage morphogenesis cartilage development limb development appendage development embryonic forelimb morphogenesis embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development forelimb morphogenesis appendage morphogenesis limb morphogenesis bone mineralization biomineral tissue development cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway cell communication signal transduction Wnt signaling pathway branching morphogenesis of an epithelial tube tube morphogenesis lung morphogenesis epithelial tube morphogenesis epithelium development morphogenesis of an epithelium morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium positive regulation of cell communication positive regulation of signal transduction regulation of canonical Wnt signaling pathway positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of Wnt signaling pathway positive regulation of cellular process positive regulation of canonical Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling dopaminergic neuron differentiation nervous system development generation of neurons neurogenesis neuron differentiation embryonic hindlimb morphogenesis hindlimb morphogenesis	extracellular region cellular anatomical entity cell surface

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR000372	Leucine-rich repeat N-terminal domain	Domain
A, C	IPR001611	Leucine-rich repeat	Repeat
A, C	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, C	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
A, C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C	IPR002131	Glycoprotein hormone receptor family	Family
A, C	IPR017452	GPCR, rhodopsin-like, 7TM	Domain
B, D	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
B, D	IPR043601	R-spondin, Fu-CRD domain	Domain
B, D	IPR036383	Thrombospondin type-1 (TSP1) repeat superfamily	Homologous Superfamily
B, D	IPR051514	R-spondin domain-containing protein	Family
B, D	IPR006212	Furin-like repeat	Repeat
B, D	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
B, D	IPR044004	Spondin-like TSP1 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: O75473	malignant colon neoplasm colorectal cancer nasopharyngeal carcinoma Pick disease Sjogren syndrome atopic eczema colonic neoplasm Colorectal Neoplasms digestive system disease large cell medulloblastoma lung carcinoma malignant pancreatic neoplasm ovarian cancer progressive supranuclear palsy benign colon neoplasm malignant colon neoplasm colorectal cancer nasopharyngeal carcinoma Pick disease Sjogren syndrome atopic eczema colonic neoplasm Colorectal Neoplasms digestive system disease large cell medulloblastoma lung carcinoma malignant pancreatic neoplasm ovarian cancer progressive supranuclear palsy benign colon neoplasm cutaneous lupus erythematosus Duchenne muscular dystrophy limb-girdle muscular dystrophy medulloblastoma pancreatic intraductal papillary-mucinous neoplasm psoriasis cancer colorectal carcinoma cystic fibrosis head and neck cancer lung cancer malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.