4KIS
Crystal Structure of a LSR-DNA Complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | Recombinase | e4kisB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Recombinase | ECOD (1.6) |
D [auth B] | Zn_ribbon_recom | e4kisB2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Zinc-nucleated domain of serine integrase | F: Zn_ribbon_recom | ECOD (1.6) |
G [auth C] | Recombinase | e4kisC2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Recombinase | ECOD (1.6) |
G [auth C] | Zn_ribbon_recom | e4kisC3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Zinc-nucleated domain of serine integrase | F: Zn_ribbon_recom | ECOD (1.6) |
J [auth D] | Recombinase | e4kisD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Recombinase | ECOD (1.6) |
J [auth D] | Zn_ribbon_recom | e4kisD2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Zinc-nucleated domain of serine integrase | F: Zn_ribbon_recom | ECOD (1.6) |
A | Recombinase | e4kisA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Recombinase | ECOD (1.6) |
A | Zn_ribbon_recom | e4kisA2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Zinc-nucleated domain of serine integrase | F: Zn_ribbon_recom | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth B] | 3.90.1750.20 | Alpha Beta | Alpha-Beta Complex | Hect, E3 ligase catalytic domain fold | Putative Large Serine Recombinase | CATH (4.3.0) |
G [auth C] | 3.90.1750.20 | Alpha Beta | Alpha-Beta Complex | Hect, E3 ligase catalytic domain fold | Putative Large Serine Recombinase | CATH (4.3.0) |
J [auth D] | 3.90.1750.20 | Alpha Beta | Alpha-Beta Complex | Hect, E3 ligase catalytic domain fold | Putative Large Serine Recombinase | CATH (4.3.0) |
A | 3.90.1750.20 | Alpha Beta | Alpha-Beta Complex | Hect, E3 ligase catalytic domain fold | Putative Large Serine Recombinase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B], G [auth C], J [auth D] | PF07508 | Recombinase (Recombinase) | Recombinase | This domain is usually found associated with Pfam:PF00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages. | Domain |
A, D [auth B], G [auth C], J [auth D] | PF13408 | Recombinase zinc beta ribbon domain (Zn_ribbon_recom) | Recombinase zinc beta ribbon domain | This short bacterial protein contains a zinc ribbon domain that is likely to be DNA-binding. This domain is found in site specific recombinase proteins. This family appears most closely related to Pfam:PF04606. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth B], G [auth C], J [auth D] | Putative integrase [Bacteriophage A118] | - | ||
B [auth E], E [auth G], H [auth I], K | DNA (26-MER) | - | - | - |
C [auth F], F [auth H], I [auth J], L | DNA (26-MER) | - | - | - |