4G9I
Crystal structure of T.kodakarensis HypF
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Acylphosphatase-like | 8049601 | 4000382 | SCOP2 (2022-06-29) |
A | SCOP2 Family | HypF zinc finger | 8092447 | 4000385 | SCOP2 (2022-06-29) |
A | SCOP2 Family | HypF zinc finger | 8092448 | 4000385 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YrdC/Sua5-like | 8092451 | 4000384 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YgjD/Kae1-like | 8092453 | 4000383 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | HypF zinc finger | 8092449 | 3002027 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8092446 | 3000165 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | HypF zinc finger | 8092450 | 3002027 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Actin-like ATPases | 8092454 | 3000092 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Actin-like ATPases | 8092455 | 3000092 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | YrdC/RibB-like | 8092452 | 3000166 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Acylphosphatase | e4g9iA5 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
A | Sua5_yciO_yrdC | e4g9iA7 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
A | HypF | e4g9iA9 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
A | Peptidase_M22_C_1 | e4g9iA8 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
A | zf-HYPF | e4g9iA6 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
B | Acylphosphatase | e4g9iB6 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
B | Sua5_yciO_yrdC | e4g9iB8 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
B | HypF | e4g9iB14 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
B | Peptidase_M22_C_1 | e4g9iB13 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
B | zf-HYPF | e4g9iB7 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
C | Acylphosphatase | e4g9iC12 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
C | Sua5_yciO_yrdC | e4g9iC14 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
C | HypF | e4g9iC16 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
C | Peptidase_M22_C_1 | e4g9iC15 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
C | zf-HYPF | e4g9iC13 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
D | Acylphosphatase | e4g9iD6 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
D | Sua5_yciO_yrdC | e4g9iD8 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
D | HypF | e4g9iD10 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
D | Peptidase_M22_C_1 | e4g9iD9 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
D | zf-HYPF | e4g9iD7 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
E | Acylphosphatase | e4g9iE6 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
E | Sua5_yciO_yrdC | e4g9iE8 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
E | HypF | e4g9iE10 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
E | Peptidase_M22_C_1 | e4g9iE9 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
E | zf-HYPF | e4g9iE7 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
F | Acylphosphatase | e4g9iF6 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
F | Sua5_yciO_yrdC | e4g9iF8 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
F | HypF | e4g9iF10 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF | ECOD (1.6) |
F | Peptidase_M22_C_1 | e4g9iF9 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
F | zf-HYPF | e4g9iF7 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22521 | Carbamoyltransferase, Kae1-like Domain, second subdomain (HypF_C_2) | Carbamoyltransferase, Kae1-like Domain, second subdomain | This domain is found at the C-terminal end of Carbamoyltransferase from Caldanaerobacter subterraneus (HypF, Swiss:Q8RDB0) and similar prokaryotic sequences. HypF is involved in the biosynthesis of the nitrile group as a precursor of the cyano groups ... | Domain | |
PF07503 | HypF finger (zf-HYPF) | HypF finger | The HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family. | Domain | |
PF00708 | Acylphosphatase (Acylphosphatase) | Acylphosphatase | - | Domain | |
PF17788 | HypF Kae1-like domain (HypF_C) | HypF Kae1-like domain | This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1]. | Domain | |
PF01300 | Telomere recombination (Sua5_yciO_yrdC) | Telomere recombination | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041440 | HypF, Kae1-like domain | Domain | |
IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily | |
IPR051060 | Carbamoyltransferase HypF-like | Family | |
IPR036046 | Acylphosphatase-like domain superfamily | Homologous Superfamily | |
IPR004421 | Carbamoyltransferase, HypF-type | Family | |
IPR017945 | DHBP synthase RibB-like alpha/beta domain superfamily | Homologous Superfamily | |
IPR006070 | Threonylcarbamoyl-AMP synthase-like domain | Domain | |
IPR011125 | Zinc finger, HypF-type | Domain | |
IPR001792 | Acylphosphatase-like domain | Domain |