3HPH
Closed tetramer of Visna virus integrase (residues 1-219) in complex with LEDGF IBD
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G | d3hphg_ | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d3hphe1 | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d3hphe2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d3hphf_ | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
H | d3hphh1 | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
H | d3hphh2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Integrase_Zn | e3hphC1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
C | rve | e3hphC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
D | Integrase_Zn | e3hphD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
D | rve | e3hphD2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
A | Integrase_Zn | e3hphA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
A | rve | e3hphA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
B | Integrase_Zn | e3hphB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
B | rve | e3hphB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G | LEDGF | e3hphG1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
E | LEDGF | e3hphE1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
F | LEDGF | e3hphF1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
H | LEDGF | e3hphH1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11467 | Lens epithelium-derived growth factor (LEDGF) (LEDGF) | Lens epithelium-derived growth factor (LEDGF) | LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ... | Domain |