3ZJY
Crystal Structure of Importin 13 - RanGTP - eIF1A complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057412 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057412 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057412 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e3zjyA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D | Ras | e3zjyD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
F | Ras | e3zjyF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B | Xpo1_1 | e3zjyB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Xpo1_1 | ECOD (1.6) |
E | Xpo1_1 | e3zjyE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Xpo1_1 | ECOD (1.6) |
G | Xpo1_1 | e3zjyG1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Xpo1_1 | ECOD (1.6) |
C | eIF-1a | e3zjyC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: eIF-1a | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
F | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF08389 | Exportin 1-like protein (Xpo1) | Exportin 1-like protein | - | Repeat | |
PF18806 | Importin 13 repeat (Importin_rep_3) | Importin 13 repeat | - | Repeat | |
PF18773 | Importin 13 repeat (Importin_rep) | Importin 13 repeat | - | Repeat | |
PF18786 | Importin 13 repeat (Importin_rep_2) | Importin 13 repeat | - | Repeat | |
PF03810 | Importin-beta N-terminal domain (IBN_N) | Importin-beta N-terminal domain | - | Repeat | |
PF01176 | Translation initiation factor 1A / IF-1 (eIF-1a) | Translation initiation factor 1A / IF-1 | This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR002041 | Ran GTPase | Family | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR001494 | Importin-beta, N-terminal domain | Domain | |
IPR051345 | Importin beta-like nuclear transport receptors | Family | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR013598 | Exportin-1/Importin-beta-like | Domain | |
IPR040520 | Importin 13 repeat | Repeat | |
IPR040944 | Importin 13 repeat 2 | Repeat | |
IPR040709 | Importin 13, repeat 1 | Repeat | |
IPR018104 | Translation initiation factor 1A (eIF-1A), conserved site | Conserved Site | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR006196 | RNA-binding domain, S1, IF1 type | Domain | |
IPR001253 | Translation initiation factor 1A (eIF-1A) | Family |