3FV3

Secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3fv3a_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
C [auth B]	d3fv3b_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
E [auth C]	d3fv3c_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
G [auth D]	d3fv3d_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
I [auth E]	d3fv3e_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
K [auth F]	d3fv3f_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
M [auth G]	d3fv3g_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
O [auth H]	d3fv3h_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Pepsin-like	8066380	4002301	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Acid proteases	8066381	3001059	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
K [auth F]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Asp_C_1	e3fv3A3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
A	Asp_N	e3fv3A2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
C [auth B]	Asp_C_1	e3fv3B3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
C [auth B]	Asp_N	e3fv3B2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
E [auth C]	Asp_C_1	e3fv3C3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
E [auth C]	Asp_N	e3fv3C2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
G [auth D]	Asp_C_1	e3fv3D3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
G [auth D]	Asp_N	e3fv3D2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
I [auth E]	Asp_C_1	e3fv3E3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
I [auth E]	Asp_N	e3fv3E2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
K [auth F]	Asp_C_1	e3fv3F3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
K [auth F]	Asp_N	e3fv3F2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
M [auth G]	Asp_C_1	e3fv3G3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
M [auth G]	Asp_N	e3fv3G2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)
O [auth H]	Asp_C_1	e3fv3H3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C_1	ECOD (1.6)
O [auth H]	Asp_N	e3fv3H2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
C [auth B]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
E [auth C]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
G [auth D]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
I [auth E]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
K [auth F]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
M [auth G]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
O [auth H]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	PF00026	Eukaryotic aspartyl protease (Asp)	Eukaryotic aspartyl protease	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	Sapp1p-secreted aspartic protease 1	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	extracellular region cellular anatomical entity
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	pepstatin A	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR001461	Aspartic peptidase A1	Family
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR033121	Peptidase family A1 domain	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR033876	Secreted aspartic endopeptidase	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR001969	Aspartic peptidase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.