3FV3 | pdb_00003fv3

Secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
O [auth H]	d3fv3h_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
M [auth G]	d3fv3g_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
K [auth F]	d3fv3f_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
I [auth E]	d3fv3e_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
G [auth D]	d3fv3d_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
E [auth C]	d3fv3c_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
C [auth B]	d3fv3b_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)
A	d3fv3a_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Candida parapsilosis ) [TaxId: 5480 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O [auth H]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
K [auth F]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Acid proteases	8066381	3001059	SCOP2B (2022-06-29)
A	SCOP2 Family	Pepsin-like	8066380	4002301	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Acid proteases	8066381	3001059	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth H]	Vinculin	e3fv3H2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
M [auth G]	Vinculin	e3fv3G2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
K [auth F]	Vinculin	e3fv3F2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
I [auth E]	Vinculin	e3fv3E2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
G [auth D]	Vinculin	e3fv3D2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
E [auth C]	Vinculin	e3fv3C2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
C [auth B]	Vinculin	e3fv3B2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
A	Vinculin	e3fv3A2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O [auth H]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
M [auth G]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
K [auth F]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
I [auth E]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
G [auth D]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
E [auth C]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
C [auth B]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
A	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	Sapp1p-secreted aspartic protease 1	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	pepstatin A	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR001461	Aspartic peptidase A1	Family
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR033121	Peptidase family A1 domain	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR033876	Secreted aspartic endopeptidase	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR001969	Aspartic peptidase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.