3EMN

The Crystal Structure of Mouse VDAC1 at 2.3 A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Porin_3	e3emnX1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Porin_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Voltage-dependent anion-selective channel protein 1	sterol binding binding organic cyclic compound binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding amide binding ceramide binding sphingolipid binding sterol binding binding organic cyclic compound binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding amide binding ceramide binding sphingolipid binding monoatomic anion transmembrane transporter activity passive transmembrane transporter activity monoatomic ion channel activity channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity wide pore channel activity porin activity protein binding transmembrane transporter binding kinase binding enzyme binding protein kinase binding oxysterol binding protein-containing complex binding cation binding ion binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding identical protein binding gated channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic anion channel activity	trans-synaptic signaling regulation of biological process signaling neuron-neuron synaptic transmission biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling cellular process behavior multicellular organismal process system process trans-synaptic signaling regulation of biological process signaling neuron-neuron synaptic transmission biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling cellular process behavior multicellular organismal process system process learning learning or memory nervous system process cognition transport monoatomic ion transmembrane transport inorganic ion transmembrane transport mitochondrial transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization mitochondrial calcium ion transmembrane transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport mitochondrial transport regulation of calcium ion transport regulation of localization regulation of cellular process negative regulation of monoatomic ion transport negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport negative regulation of transmembrane transport regulation of calcium ion transmembrane transport negative regulation of monoatomic ion transmembrane transport regulation of calcium import into the mitochondrion negative regulation of cellular process negative regulation of cation transmembrane transport calcium import into the mitochondrion regulation of metal ion transport negative regulation of calcium import into the mitochondrion regulation of transport regulation of monoatomic ion transport negative regulation of calcium ion transport import into the mitochondrion regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation monoatomic anion transport cellular response to stimulus positive regulation of organelle organization positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization response to stimulus macroautophagy regulation of cellular response to stress autophagy positive regulation of autophagy of mitochondrion cellular catabolic process positive regulation of metabolic process mitophagy regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization cellular component disassembly positive regulation of autophagy cellular metabolic process positive regulation of mitophagy regulation of mitophagy regulation of cellular metabolic process regulation of organelle organization regulation of autophagy of mitochondrion in response to mitochondrial depolarization regulation of macroautophagy regulation of response to stimulus positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization metabolic process regulation of metabolic process autophagy of mitochondrion catabolic process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process positive regulation of cellular metabolic process regulation of autophagy positive regulation of response to stimulus cellular component organization cellular response to stress organelle disassembly regulation of response to stress response to stress regulation of autophagy of mitochondrion cellular component organization or biogenesis positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of cellular process mitochondrion organization regulation of catabolic process positive regulation of catabolic process organelle organization positive regulation of mitophagy in response to mitochondrial depolarization response to mitochondrial depolarisation regulation of cellular catabolic process regulation of mitochondrion organization positive regulation of cellular catabolic process parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization nucleoside bisphosphate metabolic process ribonucleoside bisphosphate biosynthetic process oxoacid metabolic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process acetyl-CoA metabolic process organic acid metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process phosphate-containing compound metabolic process organic substance biosynthetic process small molecule metabolic process sulfur compound metabolic process thioester metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process pyruvate metabolic process primary metabolic process amide biosynthetic process nucleotide metabolic process organic cyclic compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate biosynthetic process organic cyclic compound biosynthetic process nucleoside phosphate biosynthetic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process ribose phosphate metabolic process purine nucleoside bisphosphate metabolic process ribonucleoside bisphosphate metabolic process acetyl-CoA biosynthetic process from pyruvate thioester biosynthetic process cellular biosynthetic process purine nucleotide metabolic process organic substance metabolic process acyl-CoA metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process purine nucleoside bisphosphate biosynthetic process amide metabolic process carbohydrate derivative biosynthetic process organonitrogen compound metabolic process nucleoside bisphosphate biosynthetic process carboxylic acid metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process acetyl-CoA biosynthetic process organophosphate metabolic process negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of cellular metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process behavioral defense response fear response behavioral fear response defense response multicellular organismal response to stress	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse neuron to neuron synapse cell junction postsynaptic membrane asymmetric synapse plasma membrane region mitochondrial membrane organelle inner membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane myelin sheath membrane microdomain membrane raft protein-containing complex presynaptic active zone membrane presynaptic membrane presynapse presynaptic active zone organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane membrane-enclosed lumen nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle mitochondrial nucleoid non-membrane-bounded organelle mitochondrial permeability transition pore complex mitochondrial protein-containing complex membrane protein complex pore complex transport vesicle intracellular vesicle endomembrane system cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR023614	Porin domain superfamily	Homologous Superfamily
A [auth X]	IPR001925	Porin, eukaryotic type	Family
A [auth X]	IPR027246	Eukaryotic porin/Tom40	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth X]	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Voltage-dependent anion channel (VDAC) porin (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth X]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth X]	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.