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The Crystal Structure of Mouse VDAC1 at 2.3 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 18% MPD, 0.1 M Tris-HCl, 10% PEG400, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.12 60.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.23 α = 90 b = 58.39 β = 99.25 c = 66.58 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 315 Mirror 2008-06-23 M SINGLE WAVELENGTH 2 1 x-ray 298 CCD ADSC QUANTUM 315 Mirror 2008-08-30 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E 2 SYNCHROTRON ALS BEAMLINE 5.0.2 1.00 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.3 19.51 97.5 0.029 3.2 16629 -3 48.726
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.3 2.4 98.7 0.471 2.6 3.2 2010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.3 19.51 16629 843 97.53 0.244 0.242 0.235 0.277 0.2736 RANDOM 48.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.13 0.11 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.643 r_dihedral_angle_4_deg 27.622 r_dihedral_angle_3_deg 21.451 r_dihedral_angle_1_deg 7.715 r_scangle_it 3.812 r_scbond_it 2.259 r_angle_refined_deg 1.768 r_mcangle_it 1.583 r_mcbond_it 0.831 r_chiral_restr 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.643 r_dihedral_angle_4_deg 27.622 r_dihedral_angle_3_deg 21.451 r_dihedral_angle_1_deg 7.715 r_scangle_it 3.812 r_scbond_it 2.259 r_angle_refined_deg 1.768 r_mcangle_it 1.583 r_mcbond_it 0.831 r_chiral_restr 0.121 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2167 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 22
Software Software Software Name Purpose XSCALE data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction