3A2K
Crystal structure of TilS complexed with tRNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TilS_C | e3a2kA2 | A: beta complex topology | X: PheT/TilS domain (From Topology) | H: PheT/TilS domain (From Topology) | T: PheT/TilS domain | F: TilS_C | ECOD (1.6) |
A | TilS | e3a2kA3 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: TilS | ECOD (1.6) |
A | NAD_synthase | e3a2kA1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: NAD_synthase | ECOD (1.6) |
B | TilS_C | e3a2kB1 | A: beta complex topology | X: PheT/TilS domain (From Topology) | H: PheT/TilS domain (From Topology) | T: PheT/TilS domain | F: TilS_C | ECOD (1.6) |
B | TilS | e3a2kB3 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: TilS | ECOD (1.6) |
B | NAD_synthase | e3a2kB2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: NAD_synthase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 1.10.10.1360 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | tRNA (Ile)-lysidine synthase | CATH (4.3.0) |
A | 3.30.465.60 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
B | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B | 1.10.10.1360 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | tRNA (Ile)-lysidine synthase | CATH (4.3.0) |
B | 3.30.465.60 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09179 | TilS substrate binding domain (TilS) | TilS substrate binding domain | This domain is found in the tRNA(Ile) lysidine synthetase (TilS) protein. | Domain | |
PF01171 | PP-loop family (ATP_bind_3) | PP-loop family | - | Family | |
PF11734 | TilS substrate C-terminal domain (TilS_C) | TilS substrate C-terminal domain | This domain is found in the tRNA(Ile) lysidine synthetase (TilS) protein. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015262 | tRNA(Ile)-lysidine synthase, substrate-binding domain | Domain | |
IPR011063 | tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal | Domain | |
IPR012795 | tRNA(Ile)-lysidine synthase, N-terminal | Domain | |
IPR012796 | Lysidine-tRNA(Ile) synthetase, C-terminal | Domain | |
IPR012094 | tRNA(Ile)-lysidine synthase | Family | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |