2ALA
Crystal structure of the Semliki Forest Virus envelope protein E1 in its monomeric conformation.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2alaa1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (Semliki Forest virus ) [TaxId: 11033 ], | SCOPe (2.08) |
A | d2alaa2 | Membrane and cell surface proteins and peptides | Viral glycoprotein, central and dimerisation domains | Viral glycoprotein, central and dimerisation domains | Viral glycoprotein, central and dimerisation domains | automated matches | (Semliki Forest virus ) [TaxId: 11033 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Viral glycoprotein, central and dimerisation domains | 8024812 | 4003128 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Class II viral fusion proteins C-terminal domain | 8054996 | 4007569 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | E set domains | 8054997 | 3000070 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Alpha_E1_glycop_2nd | e2alaA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
A | Alpha_E1_glycop_1st | e2alaA2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.98.10 | Mainly Beta | Sandwich | Tick-borne Encephalitis virus Glycoprotein | domain 1 | CATH (4.3.0) |
A | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002533 | Alphavirus E3 spike glycoprotein | Domain | |
IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR042304 | Alphavirus E2 glycoprotein, domain A | Homologous Superfamily | |
IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily | |
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR042305 | Alphavirus E2 glycoprotein, domain B | Homologous Superfamily | |
IPR042306 | Alphavirus E2 glycoprotein, domain C | Homologous Superfamily | |
IPR000936 | Alphavirus E2 glycoprotein | Family | |
IPR000930 | Peptidase S3, togavirin | Domain | |
IPR002548 | Alphavirus E1 glycoprotein | Domain | |
IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |