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Crystal structure of the Semliki Forest Virus envelope protein E1 in its monomeric conformation.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.1 293 PEG 8K, pH 8.1, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.6 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.38 α = 90 b = 79.38 β = 90 c = 335.91 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 1998-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.945 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 39 87.6 0.075 8 7.8 10666 10666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.21 76.1 0.124 5.4 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3 39 13467 10604 1232 87.9 0.27199 0.26654 0.2685 0.31868 0.3241 RANDOM 4.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.51 -1.76 -3.51 5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.652 r_dihedral_angle_3_deg 15.366 r_dihedral_angle_4_deg 10.636 r_dihedral_angle_1_deg 6.875 r_angle_refined_deg 0.996 r_angle_other_deg 0.707 r_scangle_it 0.378 r_scbond_it 0.246 r_mcangle_it 0.21 r_symmetry_hbond_refined 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.652 r_dihedral_angle_3_deg 15.366 r_dihedral_angle_4_deg 10.636 r_dihedral_angle_1_deg 6.875 r_angle_refined_deg 0.996 r_angle_other_deg 0.707 r_scangle_it 0.378 r_scbond_it 0.246 r_mcangle_it 0.21 r_symmetry_hbond_refined 0.201 r_mcbond_it 0.184 r_nbd_refined 0.175 r_nbtor_refined 0.173 r_nbd_other 0.158 r_xyhbond_nbd_refined 0.153 r_symmetry_vdw_refined 0.124 r_symmetry_vdw_other 0.101 r_nbtor_other 0.078 r_chiral_restr 0.06 r_xyhbond_nbd_other 0.058 r_mcbond_other 0.017 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling MLPHARE phasing