2IYK
Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2B (2022-06-29) |
B | SCOP2 Family | UPF2 interacting domain-like | 8044819 | 4004155 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UPF1_Zn_bind_2nd | e2iykA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_2nd | ECOD (1.6) |
A | UPF1_Zn_bind_1st | e2iykA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_1st | ECOD (1.6) |
B | UPF1_Zn_bind_2nd | e2iykB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_2nd | ECOD (1.6) |
B | UPF1_Zn_bind_1st | e2iykB2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09416 | RNA helicase (UPF2 interacting domain) (UPF1_Zn_bind) | RNA helicase (UPF2 interacting domain) | UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediat ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041677 | DNA2/NAM7 helicase, helicase domain | Domain | |
IPR018999 | RNA helicase UPF1, Cys/His rich zinc-binding domain | Domain | |
IPR045055 | DNA2/NAM7-like helicase | Family | |
IPR040812 | RNA helicase UPF1, 1B domain | Domain | |
IPR041679 | DNA2/NAM7 helicase-like, C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR047187 | Upf1-like, C-terminal helicase domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q92900 | :