2IJD
Crystal Structure of the Poliovirus Precursor Protein 3CD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | d2ijd11 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral cysteine protease of trypsin fold | 3C cysteine protease (picornain 3C) | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
A [auth 1] | d2ijd12 | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | RNA-dependent RNA-polymerase | Viral RNA polymerase | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
B [auth 2] | d2ijd21 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral cysteine protease of trypsin fold | 3C cysteine protease (picornain 3C) | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
B [auth 2] | d2ijd22 | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | RNA-dependent RNA-polymerase | Viral RNA polymerase | (Human poliovirus 1 Mahoney ) [TaxId: 12081 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | Peptidase_C3 | e2ijd11 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Peptidase_C3 | ECOD (1.6) |
A [auth 1] | RdRP_1_C | e2ijd12 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
A [auth 1] | RdRP_1_N | e2ijd13 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
B [auth 2] | Peptidase_C3 | e2ijd21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Peptidase_C3 | ECOD (1.6) |
B [auth 2] | RdRP_1_C | e2ijd22 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
B [auth 2] | RdRP_1_N | e2ijd23 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth 1] | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
B [auth 2] | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], B [auth 2] | PF00548 | 3C cysteine protease (picornain 3C) (Peptidase_C3) | 3C cysteine protease (picornain 3C) | - | Family |
A [auth 1], B [auth 2] | PF00680 | Viral RNA-dependent RNA polymerase (RdRP_1) | Viral RNA-dependent RNA polymerase | - | Family |