2FZ4
Crystal Structure of the N-terminal half of Archaeoglobus Fulgidus XPB
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2fz4a1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Tandem AAA-ATPase domain | DNA repair protein RAD25 | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF08456 | e2fz4A2 | A: a+b two layers | X: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | H: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | T: DNA helicase UvsW N-terminal a+b domain-related | F: EUF08456 | ECOD (1.6) |
A | DEAD_1 | e2fz4A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1170.30 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | CATH (4.3.0) | |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family | |
PF18458 | Xeroderma pigmentosum group B helicase damage recognition domain (XPB_DRD) | Xeroderma pigmentosum group B helicase damage recognition domain | This domain is found in the N-terminal region of xeroderma pigmentosum group B (XPB) helicase present in Archaeoglobus fulgidus. XPB is essential for transcription, nucleotide excision repair, and TFIIH functional assembly. The domain is a damage rec ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR040699 | DNA 3'-5' translocase XPB, damage recognition domain | Domain | |
IPR050615 | ATP-dependent DNA Helicase | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |