1YO8
Structure of the C-terminal domain of human thrombospondin-2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TSP_C | e1yo8A1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: TSP_C | ECOD (1.6) |
A | hEGF_4 | e1yo8A4 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: hEGF_4 | ECOD (1.6) |
A | EGF_CA_2 | e1yo8A5 | A: few secondary structure elements | X: EGF-like | H: Fibulin-4 EGF-like 1 domain (From Topology) | T: Fibulin-4 EGF-like 1 domain | F: EGF_CA_2 | ECOD (1.6) |
A | TSP_3 | e1yo8A2 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: TSP_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.25.10 | Mainly Beta | Ribbon | Laminin | Laminin | CATH (4.3.0) |
A | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12947 | EGF domain (EGF_3) | EGF domain | This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein [1]. | Domain | |
PF02412 | Thrombospondin type 3 repeat (TSP_3) | Thrombospondin type 3 repeat | The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats [1]. The repeat lacks defined secondary structure [2]. | Domain | |
PF05735 | Thrombospondin C-terminal region (TSP_C) | Thrombospondin C-terminal region | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024731 | EGF domain | Domain | |
IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat | |
IPR008859 | Thrombospondin, C-terminal | Domain | |
IPR017897 | Thrombospondin, type 3 repeat | Repeat | |
IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily | |
IPR003367 | Thrombospondin, type 3-like repeat | Repeat | |
IPR028974 | TSP type-3 repeat | Homologous Superfamily | |
IPR001007 | VWFC domain | Domain | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR001881 | EGF-like calcium-binding domain | Domain | |
IPR048287 | Thrombospondin-like, N-terminal domain | Domain | |
IPR000742 | EGF-like domain | Domain |