Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1ym2a_ All beta proteins Acid proteases Acid proteases Pepsin-like automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1ym2b_ All beta proteins Acid proteases Acid proteases Pepsin-like automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1ym2c_ All beta proteins Acid proteases Acid proteases Pepsin-like automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAcid proteases 8036280 3001059 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAcid proteases 8036280 3001059 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAcid proteases 8036280 3001059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAsp_C_1e1ym2A2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_C_1ECOD (1.6)
AAsp_Ne1ym2A3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_NECOD (1.6)
BAsp_C_1e1ym2B2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_C_1ECOD (1.6)
BAsp_Ne1ym2B3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_NECOD (1.6)
CAsp_C_1e1ym2C2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_C_1ECOD (1.6)
CAsp_Ne1ym2C3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)
B2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)
C2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00026Eukaryotic aspartyl protease (Asp)Eukaryotic aspartyl protease- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Beta-secretase 1
D [auth X],
E [auth Y],
F [auth Z]
NVP-AUR200 INHIBITOR---

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth X],
E [auth Y],
F [auth Z]
24O
D [auth X],
E [auth Y],
F [auth Z]
ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
D [auth X],
E [auth Y],
F [auth Z]
LYT RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354