1NRK
YGFZ PROTEIN
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1nrka1 | All beta proteins | Elongation factor/aminomethyltransferase common domain | Aminomethyltransferase beta-barrel domain | Aminomethyltransferase beta-barrel domain | Hypothetical protein YgfZ, C-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1nrka2 | Alpha and beta proteins (a+b) | Folate-binding domain | Folate-binding domain | Aminomethyltransferase folate-binding domain | Hypothetical protein YgfZ, N-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK09559 | e1nrkA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PRK09559 | ECOD (1.6) |
A | Sortase | e1nrkA3 | A: a+b two layers | X: Alpha-beta plaits | H: Aminomethyltransferase folate-binding domain (From Topology) | T: Aminomethyltransferase folate-binding domain | F: Sortase | ECOD (1.6) |
A | UNK_F_TYPE | e1nrkA2 | A: a+b two layers | X: Alpha-beta plaits | H: Aminomethyltransferase folate-binding domain (From Topology) | T: Aminomethyltransferase folate-binding domain | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1630 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 3.30.70.1400 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Aminomethyltransferase beta-barrel domains | CATH (4.3.0) |
A | 2.40.30.160 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21130 | YgfZ, beta-barrel domain (YgfZ_barrel) | YgfZ, beta-barrel domain | YgfZ is a folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs [1,2]. It consists of a folate-binding domain at the N-terminal (Pfam:PF01571) and a six-stranded antiparallel beta-barrel at the C-te ... | Domain | |
PF01571 | Aminomethyltransferase folate-binding domain (GCV_T) | Aminomethyltransferase folate-binding domain | This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl tran ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023758 | tRNA-modifying protein YgfZ | Family | |
IPR017703 | YgfZ/GcvT conserved site | Conserved Site | |
IPR029043 | Glycine cleavage T-protein/YgfZ, C-terminal | Homologous Superfamily | |
IPR045179 | YgfZ/GcvT | Family | |
IPR006222 | Aminomethyltransferase, folate-binding domain | Domain | |
IPR048451 | tRNA-modifying protein YgfZ-like, beta-barrel domain | Domain |