Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d1lm8b_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth C]d1lm8c_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth V]d1lm8v_ All beta proteins Prealbumin-like VHL VHL VHL human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
C [auth V]SCOP2 FamilyVHL 8028934 4002116 SCOP2 (2022-06-29)
C [auth V]SCOP2 SuperfamilyVHL 8041313 3000841 SCOP2 (2022-06-29)
D [auth H]SCOP2B SuperfamilyHIF-1alpha pVHL binding region-like 8095959 3002714 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]ubiquitin_2e1lm8B1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
B [auth C]Skp1_POZ_1e1lm8C1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
C [auth V]VHLe1lm8V1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
C [auth V]VHL_Ce1lm8V2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B [auth C]PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
C [auth V]PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
C [auth V]PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]ELONGIN B
B [auth C]ELONGIN C
C [auth V]Von Hippel-Lindau disease tumor suppressor
D [auth H]Hypoxia-inducible factor 1 alpha

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR000626Ubiquitin-like domainDomain
A [auth B]IPR039049Elongin BFamily
A [auth B]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B [auth C]IPR016073SKP1 component, POZ domainDomain
B [auth C]IPR001232S-phase kinase-associated protein 1-likeFamily
B [auth C]IPR039948Elongin-CFamily
B [auth C]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
C [auth V]IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
C [auth V]IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
C [auth V]IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
C [auth V]IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
C [auth V]IPR036208VHL superfamilyHomologous Superfamily
C [auth V]IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily
D [auth H]IPR013655PAS fold-3Domain
D [auth H]IPR001321Hypoxia-inducible factor-1 alphaFamily
D [auth H]IPR035965PAS domain superfamilyHomologous Superfamily
D [auth H]IPR014887HIF-1 alpha, C-terminal transactivation domainDomain
D [auth H]IPR000014PAS domainDomain
D [auth H]IPR011598Myc-type, basic helix-loop-helix (bHLH) domainDomain
D [auth H]IPR001610PAC motifRepeat
D [auth H]IPR036638Helix-loop-helix DNA-binding domain superfamilyHomologous Superfamily
D [auth H]IPR021537Hypoxia-inducible factor, alpha subunit-likeDomain
D [auth H]IPR013767PAS foldDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth B]PharosQ15370
B [auth C]PharosQ15369
C [auth V]PharosP40337
D [auth H]PharosQ16665

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth H]HYP Parent Component: PRO

RESIDAA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039