Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyKanamycin nucleotidyltransferase (KNTase) N-terminal domain8029756 4002814 SCOP2 (2022-06-29)
ASCOP2 FamilyKanamycin nucleotidyltransferase (KNTase) C-terminal domain8029755 4002165 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNucleotidyltransferase-like8042135 3000129 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHEPN domain-like8042134 3000904 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyHEPN domain-like8042134 3000904 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleotidyltransferase-like8042135 3000129 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKNTase_Ce1knyA1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: KNTase_CECOD (1.6)
ANTP_transf_2e1knyA2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: NTP_transf_2ECOD (1.6)
BKNTase_Ce1knyB1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: KNTase_CECOD (1.6)
BNTP_transf_2e1knyB2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: NTP_transf_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
A, B
ARO:3002623ANT(4')-IaANT(4')-Ia is a plasmid-encoded aminoglycoside nucleotidyltransferase in S. epidermidis, S. aureus, Enterococcus spp. and Bacillus spp.CARD (3.2.9)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
A, B
ARO:3000229ANT(4')aminoglycoside antibioticantibiotic inactivationCARD (3.2.9)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF07827KNTase C-terminal domain (KNTase_C)KNTase C-terminal domainKanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit be ...Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
A, B
kanamycin nucleotidyltransferase  M-CSA #647

Kanamycin nucleotidyltransferase (KNTase) is a plasmid encoded enzyme responsible for some types of bacterial resistance to aminoglycosides. It catalyses the transfer of a nucleoside monophosphate group onto the 4' hydroxyl group of kanamycin, causing deactivation of this drug. The enzyme is also capable of deactivating many other drugs including neomycins, and can utilise ATP, GTP, CTP, TTP or UTP as the NMP donor.

Defined by 4 residues: GLU:A-145LYS:A-149ASP:B-50GLU:B-52
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Explore in 3DM-CSA Motif Definition
EC: 2.7.7 (PDB Primary Data)