8AIR

Crystal structure of cutinase RgCutII from Rhizobacter gummiphilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.198 

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Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

Concentration-Dependent Inhibition of Mesophilic PETases on Poly(ethylene terephthalate) Can Be Eliminated by Enzyme Engineering.

Avilan, L.Lichtenstein, B.R.Konig, G.Zahn, M.Allen, M.D.Oliveira, L.Clark, M.Bemmer, V.Graham, R.Austin, H.P.Dominick, G.Johnson, C.W.Beckham, G.T.McGeehan, J.E.Pickford, A.R.

(2023) ChemSusChem 16: e202202277-e202202277

  • DOI: https://doi.org/10.1002/cssc.202202277
  • Primary Citation of Related Structures:  
    8AIR, 8AIS, 8AIT

  • PubMed Abstract: 

    Enzyme-based depolymerization is a viable approach for recycling of poly(ethylene terephthalate) (PET). PETase from Ideonella sakaiensis (IsPETase) is capable of PET hydrolysis under mild conditions but suffers from concentration-dependent inhibition. In this study, this inhibition is found to be dependent on incubation time, the solution conditions, and PET surface area. Furthermore, this inhibition is evident in other mesophilic PET-degrading enzymes to varying degrees, independent of the level of PET depolymerization activity. The inhibition has no clear structural basis, but moderately thermostable IsPETase variants exhibit reduced inhibition, and the property is completely absent in the highly thermostable HotPETase, previously engineered by directed evolution, which simulations suggest results from reduced flexibility around the active site. This work highlights a limitation in applying natural mesophilic hydrolases for PET hydrolysis and reveals an unexpected positive outcome of engineering these enzymes for enhanced thermostability.


  • Organizational Affiliation

    Centre for Enzyme Innovation, School of Biological Sciences, Institute of Biological and Biomedical Sciences, University of Portsmouth, Portsmouth, PO1 2DY, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RgCutII287Piscinibacter gummiphilusMutation(s): 0 
Gene Names: A4W93_03190
UniProt
Find proteins for A0A1W6L438 (Piscinibacter gummiphilus)
Explore A0A1W6L438 
Go to UniProtKB:  A0A1W6L438
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1W6L438
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.198 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.127α = 90
b = 63.127β = 90
c = 222.746γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
UK Research and Innovation (UKRI)United KingdomResearch England E3

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-08
    Type: Initial release
  • Version 1.1: 2023-03-15
    Changes: Database references
  • Version 1.2: 2023-03-22
    Changes: Database references
  • Version 1.3: 2023-05-03
    Changes: Database references
  • Version 1.4: 2024-02-07
    Changes: Data collection, Database references, Refinement description