8AIR

Crystal structure of cutinase RgCutII from Rhizobacter gummiphilus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1 M HEPES pH 7.5, 1 M sodium acetate

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.09

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.127	α = 90
b = 63.127	β = 90
c = 222.746	γ = 120

Symmetry
Space Group	P 61 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-03-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91587	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.08	49.08	99.4	0.068	0.024	0.999	11.7	8.7		112681

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.08	1.1	96.3		0.774	0.44	0.555	1.8	6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4cg1	1.08	49.076	104451	5265	92.16	0.199	0.1978	0.214	12.965

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.466	0.233		0.466		-1.511

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.66
r_dihedral_angle_3_deg	13.146
r_dihedral_angle_2_deg	10.686
r_dihedral_angle_1_deg	6.252
r_lrange_it	4.851
r_lrange_other	4.569
r_scangle_it	2.046
r_scangle_other	2.046
r_angle_refined_deg	1.841
r_scbond_it	1.376
r_scbond_other	1.376
r_mcangle_other	1.322
r_mcangle_it	1.321
r_mcbond_it	0.842
r_mcbond_other	0.836
r_angle_other_deg	0.638
r_symmetry_xyhbond_nbd_refined	0.245
r_nbd_refined	0.238
r_xyhbond_nbd_refined	0.207
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.185
r_nbd_other	0.164
r_symmetry_nbd_refined	0.133
r_chiral_restr	0.097
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.011
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1920
Nucleic Acid Atoms
Solvent Atoms	334
Heterogen Atoms	8

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
MOLREP	phasing