6TIB

Structure of A. niger Fdc I327S variant in complex with 2 naphthoic acid

  • Classification: LIGASE
  • Organism(s): Aspergillus niger
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2019-11-22 Released: 2020-06-24 
  • Deposition Author(s): Leys, D.
  • Funding Organization(s): Biotechnology and Biological Sciences Research Council, European Research Council

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.07 Å
  • R-Value Free: 0.152 
  • R-Value Work: 0.124 

wwPDB Validation 3D Report Full Report



Literature

Enzymatic C-H activation of aromatic compounds through CO2 fixation

Aleku, G.A.Saaret, A.Bradshaw-Allen, R.T.Derrington, S.R.Titchiner, G.R.Gostimskaya, I.Gahloth, D.Parker, D.A.Hay, S.Leys, D.

(2020) Nat Chem Biol 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ferulic acid decarboxylase 1
AAA
508Aspergillus nigerMutation(s): 1 
Gene Names: FDC1ATCC64974_75990CAN33_0036860
EC: 4.1.1.102
Find proteins for A0A3F3RNU4 (Aspergillus niger)
Go to UniProtKB:  A0A3F3RNU4
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BYN
Query on BYN

Download CCD File 
AAA
hydroxylated prenyl-FMN
C22 H31 N4 O10 P
BDNVCRCOZIAGID-LWGWVAHUSA-N
 Ligand Interaction
FIV
Query on FIV

Download CCD File 
AAA
naphthalene-2-carboxylic acid
C11 H8 O2
UOBYKYZJUGYBDK-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download CCD File 
AAA
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
MN
Query on MN

Download CCD File 
AAA
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
K
Query on K

Download CCD File 
AAA
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.07 Å
  • R-Value Free: 0.152 
  • R-Value Work: 0.124 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.642α = 90
b = 63.592β = 90
c = 87.741γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
AutoPROCdata reduction
AutoPROCdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-11-22 
  • Released Date: 2020-06-24 
  • Deposition Author(s): Leys, D.

Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/K017802
European Research CouncilUnited Kingdompre-FAB 695013

Revision History 

  • Version 1.0: 2020-06-24
    Type: Initial release