1FKF

ATOMIC STRUCTURE OF FKBP-FK506, AN IMMUNOPHILIN-IMMUNOSUPPRESSANT COMPLEX

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Work: 0.170 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history. 


Literature

Atomic structure of FKBP-FK506, an immunophilin-immunosuppressant complex.

Van Duyne, G.D., Standaert, R.F., Karplus, P.A., Schreiber, S.L., Clardy, J.

(1991) Science 252: 839-842

  • DOI: 10.1126/science.1709302
  • Primary Citation of Related Structures:  
    1FKF

  • PubMed Abstract: 

    • The structure of the human FK506 binding protein (FKBP), complexed with the immunosuppressant FK506, has been determined to 1.7 angstroms resolution by x-ray crystallography. The conformation of the protein changes little upon complexation, but the confo ...

    The structure of the human FK506 binding protein (FKBP), complexed with the immunosuppressant FK506, has been determined to 1.7 angstroms resolution by x-ray crystallography. The conformation of the protein changes little upon complexation, but the conformation of FK506 is markedly different in the bound and unbound forms. The drug's association with the protein involves five hydrogen bonds, a hydrophobic binding pocket lined with conserved aromatic residues, and an unusual carbonyl binding pocket. The nature of this complex has implications for the mechanism of rotamase catalysis and for the biological actions of FK506 and rapamycin.

    Related Citations: 
    • Molecular Cloning and Overexpression of the Human Fk506-Binding Protein Fkbp
      Standaert, R.F., Galat, A., Verdine, G.L., Schreiber, S.L.
      (1990) Nature 346: 671
    Organizational Affiliation: 

    Department of Chemistry, Baker Laboratory, Cornell University, Ithaca, NY 14853-1301.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FK506 BINDING PROTEIN A107Homo sapiensMutation(s): 0 
Gene Names: FKBP1A, FKBP1, FKBP12
EC: 5.2.1.8
Find proteins for P62942 (Homo sapiens)
Explore P62942 
Go to UniProtKB:  P62942
NIH Common Fund Data Resources
PHAROS:  P62942
GTEx:  ENSG00000088832
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FK5
Query on FK5
Download Ideal Coordinates CCD File 
A
8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
C44 H69 N O12
QJJXYPPXXYFBGM-LFZNUXCKSA-N		 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
FK5IC50:  2.299999952316284   nM  BindingDB
FK5IC50:  14   nM  BindingDB
FK5Ki:  0.4000000059604645   nM  BindingDB
FK5Kd:  0.20000000298023224   nM  BindingDB
FK5Kd :  0.4000000059604645   nM  PDBBind
FK5IC50:  1000   nM  BindingDB
FK5Kd:  0.4000000059604645   nM  Binding MOAD
FK5EC50:  0.8999999761581421   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Work: 0.170 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.07α = 90
b = 58.07β = 90
c = 55.65γ = 90
Software Package:
Software NamePurpose
X-PLORrefinement

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1991-07-15
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-11-16
    Changes: Atomic model
  • Version 1.4: 2017-11-29
    Changes: Derived calculations, Other