5NHQ
Nuclear Magnetic Resonance Structure of the Human Polyoma JC Virus Agnoprotein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.2 mM no labelling agnoprotein | trifluoroethanol/water | 200 mM NaCl mM | 3.0 | pa Pa | 313 | Bruker AVANCE III 600 |
2 | 2D 1H-1H TOCSY | 0.2 mM no labelling agnoprotein | trifluoroethanol/water | 200 mM NaCl mM | 3.0 | pa Pa | 313 | Bruker AVANCE III 600 |
3 | 2D DQF-COSY | 0.2 mM no labelling agnoprotein | trifluoroethanol/water | 200 mM NaCl mM | 3.0 | pa Pa | 313 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 12 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Version: 1.2 at patch level 1 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | chemical shift assignment | CcpNmr Analysis | 2.4.0 | CCPN |
3 | processing | TopSpin | 3.2 | Bruker Biospin |
4 | peak picking | CcpNmr Analysis | 2.4 | CCPN |
5 | structure calculation | CNS | Version: 1.2 at patch level 1 | Brunger, Adams, Clore, Gros, Nilges and Read |