4OY5

0.89 Angstrom resolution crystal structure of (Gly-Pro-Hyp)10


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP27722% PEG400, 5% acetic acid
Crystal Properties
Matthews coefficientSolvent content
1.8433.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 13.86α = 90
b = 26.15β = 105.43
c = 19.88γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2013-04-13SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX10.7293Australian SynchrotronMX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.8919.1996.554.77.310270
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.890.9193.925.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT0.8919.16975651496.630.067730.067220.07732RANDOM2.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.050.04-0.070.01
RMS Deviations
KeyRefinement Restraint Deviation
r_rigid_bond_restr7.333
r_angle_refined_deg4.406
r_angle_other_deg4.291
r_sphericity_free3.143
r_dihedral_angle_1_deg3.006
r_sphericity_bonded2.656
r_chiral_restr0.279
r_bond_refined_d0.047
r_gen_planes_refined0.016
r_gen_planes_other0.014
RMS Deviations
KeyRefinement Restraint Deviation
r_rigid_bond_restr7.333
r_angle_refined_deg4.406
r_angle_other_deg4.291
r_sphericity_free3.143
r_dihedral_angle_1_deg3.006
r_sphericity_bonded2.656
r_chiral_restr0.279
r_bond_refined_d0.047
r_gen_planes_refined0.016
r_gen_planes_other0.014
r_bond_other_d0.007
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms133
Nucleic Acid Atoms
Solvent Atoms52
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SHELXDEphasing