3BUL

E. coli I690C/G743C MetH C-terminal fragment (649-1227)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION7.23100.2 M potassium nitrate, and 20 % (w/v) PEG3350, pH 7.2, EVAPORATION, temperature 310K
Crystal Properties
Matthews coefficientSolvent content
2.9958.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.529α = 90
b = 106.529β = 90
c = 137.15γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMARMOSAIC 300 mm CCDK-B pair of biomorph mirrors for vertical and horizontal focusing2007-04-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B0.9793APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2942.0799.20.1460.1511617.3063590842.722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.292.4395.30.8090.8383.4615.015516

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1K7Y2.342.07357383573717731000.2280.20.1980.247RANDOM40.387
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.080.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.638
r_dihedral_angle_4_deg23.126
r_dihedral_angle_3_deg18.626
r_dihedral_angle_1_deg6.717
r_scangle_it5.549
r_scbond_it3.585
r_angle_refined_deg2.318
r_mcangle_it2.271
r_mcbond_it1.36
r_nbtor_refined0.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.638
r_dihedral_angle_4_deg23.126
r_dihedral_angle_3_deg18.626
r_dihedral_angle_1_deg6.717
r_scangle_it5.549
r_scbond_it3.585
r_angle_refined_deg2.318
r_mcangle_it2.271
r_mcbond_it1.36
r_nbtor_refined0.323
r_symmetry_vdw_refined0.258
r_nbd_refined0.251
r_chiral_restr0.234
r_symmetry_hbond_refined0.202
r_xyhbond_nbd_refined0.171
r_bond_refined_d0.025
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4572
Nucleic Acid Atoms
Solvent Atoms63
Heterogen Atoms91

Software

Software
Software NamePurpose
XSCALEdata scaling
EPMRphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
XDSdata reduction