2ZFD

The crystal structure of plant specific calcium binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.8131.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.092α = 90
b = 45.481β = 92.64
c = 92.39γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 2102007-02-11MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A0.9796, 0.9798, 0.9645Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.25096.70.0583.885565
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2491.30.4313.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.22080720427196.130.180320.179710.19162RANDOM7.746
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.180.03-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.316
r_dihedral_angle_4_deg16.133
r_dihedral_angle_3_deg10.736
r_dihedral_angle_1_deg5.845
r_scangle_it2.795
r_scbond_it1.887
r_angle_refined_deg1.181
r_mcangle_it1.18
r_angle_other_deg0.856
r_mcbond_it0.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.316
r_dihedral_angle_4_deg16.133
r_dihedral_angle_3_deg10.736
r_dihedral_angle_1_deg5.845
r_scangle_it2.795
r_scbond_it1.887
r_angle_refined_deg1.181
r_mcangle_it1.18
r_angle_other_deg0.856
r_mcbond_it0.8
r_symmetry_vdw_refined0.31
r_symmetry_vdw_other0.274
r_nbd_refined0.233
r_nbd_other0.181
r_nbtor_refined0.179
r_mcbond_other0.174
r_symmetry_hbond_refined0.125
r_xyhbond_nbd_refined0.122
r_metal_ion_refined0.09
r_nbtor_other0.083
r_symmetry_metal_ion_refined0.079
r_chiral_restr0.071
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2387
Nucleic Acid Atoms
Solvent Atoms236
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing