X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.227710 % PEG 8000, 100 mM sodium acetate, 10 mM magnesium chloride & 360 mM sodium chloride, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
4.572.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.88α = 90
b = 103.88β = 90
c = 110.56γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVOsmic mirrors2004-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123097.60.07711.35.65239982399860.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0793.70.4453.44.984351

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.5302399823998121398.750.2560.2560.2530.31RANDOM48.355
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.011.513.01-4.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.221
r_dihedral_angle_3_deg18.301
r_dihedral_angle_4_deg11.589
r_dihedral_angle_1_deg5.991
r_scangle_it1.846
r_angle_refined_deg1.321
r_scbond_it1.145
r_mcangle_it0.98
r_mcbond_it0.557
r_nbtor_refined0.317
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.221
r_dihedral_angle_3_deg18.301
r_dihedral_angle_4_deg11.589
r_dihedral_angle_1_deg5.991
r_scangle_it1.846
r_angle_refined_deg1.321
r_scbond_it1.145
r_mcangle_it0.98
r_mcbond_it0.557
r_nbtor_refined0.317
r_symmetry_hbond_refined0.228
r_nbd_refined0.213
r_symmetry_vdw_refined0.194
r_xyhbond_nbd_refined0.141
r_chiral_restr0.079
r_bond_refined_d0.013
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2625
Nucleic Acid Atoms
Solvent Atoms33
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata scaling
SOLVEphasing