1N53
SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 | |
2 | 2D TOCSY | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 | |
3 | DQF-COSY | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 | |
4 | 3D_13C-separated_NOESY | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 | |
5 | 2D_HSQC | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 | |
6 | 2D_1H_31P_HETCOR | 0.7 mM (U-15N, U-13C) or 1.2 mM (unlabeled) T box model RNA (AM1A); 10 mM sodium phosphate buffer pH 6.5, 0.01 mM EDTA | 100% D2O | 10 mM | 6.5 | ambient | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DMX | 400 |
3 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics | A total of 313 distance constraints and 59 dihedral angle constraints were used. | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | The minimized average structure of the 9 lowest energy structures (all with favorable non-bond energy and the fewest number of constraint violations) is submitted. |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D and 3D homonuclear and heteronuclear NMR techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 95,98 | |
2 | structure solution | X-PLOR | 98.1 | Brunger |
3 | processing | XwinNMR | ||
4 | refinement | X-PLOR | 98.1 | Brunger |