7QGQ

Extended H/L (SLPH/SLPL) complex from C. difficile (CD630 strain) fit into R20291 S-layer negative stain map


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth A]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
H [auth P]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
I [auth Q]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
O [auth F]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
R [auth G]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
V [auth H]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)
W [auth I]SCOP2B SuperfamilyCwp8 N-terminal domain-like8056046 3002336 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04122ell wall binding domain 2 (CWB2) (CW_binding_2)ell wall binding domain 2 (CWB2)This domain is found in 1 to 3 tandem copies in a wide variety of bacterial cell surface proteins. It has been show the three tandem repeats of the CWB2 domain are essential for correct anchoring to the cell wall [1]. It was shown that in SlpA and Cw ...This domain is found in 1 to 3 tandem copies in a wide variety of bacterial cell surface proteins. It has been show the three tandem repeats of the CWB2 domain are essential for correct anchoring to the cell wall [1]. It was shown that in SlpA and Cwp2 that these domains were essential for the binding of PSII an anionic teichoic acid-like component of the cell wall [1]. The structure of the Cwp8 and Cwp6 proteins shows that this domain forms a trimeric arrangement with each domain adopting a structure with some similarity to the Toprim fold [2]. A groove containing many conserved residues was predicted to be the site of the PSII molecule [2].
Domain
PF12211Low molecular weight S layer protein N terminal (LMWSLP_N)Low molecular weight S layer protein N terminalThis family of proteins is found in bacteria. Proteins in this family are typically between 328 and 381 amino acids in length. There is a conserved LGDG sequence motif. Clostridial species have a layer of surface proteins surrounding their membrane. ...This family of proteins is found in bacteria. Proteins in this family are typically between 328 and 381 amino acids in length. There is a conserved LGDG sequence motif. Clostridial species have a layer of surface proteins surrounding their membrane. This layer is comprised of a high molecular weight protein and a low molecular weight protein. This domain is the N terminal domain of the low molecular weight protein. It is a structural domain.
Domain

InterPro: Protein Family Classification InterPro Database Homepage