Annotations: 5NUG

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF12774	e5nugA10	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12774	ECOD (1.6)
A	PF12777	e5nugA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12777	ECOD (1.6)
A	PF12780	e5nugA2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12780	ECOD (1.6)
A	PF12781	e5nugA12	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12781	ECOD (1.6)
A	PF17852	e5nugA8	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF17852	ECOD (1.6)
A	PF18198	e5nugA3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF18198	ECOD (1.6)
A	PF22597	e5nugA14	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF22597	ECOD (1.6)
A	PF08393	e5nugA6	A: alpha superhelices	X: Linker domain of cytoplasmic dynein heavy chain (From Topology)	H: Linker domain of cytoplasmic dynein heavy chain (From Topology)	T: Linker domain of cytoplasmic dynein heavy chain	F: PF08393	ECOD (1.6)
A	PF18199	e5nugA11	A: a+b complex topology	X: C-terminal domain of cytoplasmic dynein heavy chain (From Topology)	H: C-terminal domain of cytoplasmic dynein heavy chain (From Topology)	T: C-terminal domain of cytoplasmic dynein heavy chain	F: PF18199	ECOD (1.6)
A	PF03028	e5nugA13	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF03028	ECOD (1.6)
A	PF07728	e5nugA15	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF07728	ECOD (1.6)
A	PF12774	e5nugA9	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12774	ECOD (1.6)
A	PF12775	e5nugA5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12775	ECOD (1.6)
A	PF12780	e5nugA4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12780	ECOD (1.6)
A	PF12781	e5nugA7	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12781	ECOD (1.6)
B	PF12774	e5nugB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12774	ECOD (1.6)
B	PF12777	e5nugB13	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12777	ECOD (1.6)
B	PF12780	e5nugB10	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12780	ECOD (1.6)
B	PF12781	e5nugB6	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF12781	ECOD (1.6)
B	PF17852	e5nugB3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF17852	ECOD (1.6)
B	PF18198	e5nugB5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF18198	ECOD (1.6)
B	PF22597	e5nugB4	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF22597	ECOD (1.6)
B	PF08393	e5nugB2	A: alpha superhelices	X: Linker domain of cytoplasmic dynein heavy chain (From Topology)	H: Linker domain of cytoplasmic dynein heavy chain (From Topology)	T: Linker domain of cytoplasmic dynein heavy chain	F: PF08393	ECOD (1.6)
B	PF18199	e5nugB11	A: a+b complex topology	X: C-terminal domain of cytoplasmic dynein heavy chain (From Topology)	H: C-terminal domain of cytoplasmic dynein heavy chain (From Topology)	T: C-terminal domain of cytoplasmic dynein heavy chain	F: PF18199	ECOD (1.6)
B	PF03028	e5nugB12	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF03028	ECOD (1.6)
B	PF07728	e5nugB14	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF07728	ECOD (1.6)
B	PF12774	e5nugB15	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12774	ECOD (1.6)
B	PF12775	e5nugB7	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12775	ECOD (1.6)
B	PF12780	e5nugB8	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12780	ECOD (1.6)
B	PF12781	e5nugB9	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF12781	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12775	P-loop containing dynein motor region (AAA_7)	P-loop containing dynein motor region	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydr ...	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs) [1].	Domain
A, B	PF18198	Dynein heavy chain AAA lid domain (AAA_lid_11)	Dynein heavy chain AAA lid domain	This family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.	Domain
A, B	PF12774	Hydrolytic ATP binding site of dynein motor region (AAA_6)	Hydrolytic ATP binding site of dynein motor region	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6) [1]. This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis [2]. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site [1].	Domain
A, B	PF12781	ATP-binding dynein motor region (AAA_9)	ATP-binding dynein motor region	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...	This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk [1].	Domain
A, B	PF18199	Dynein heavy chain C-terminal domain (Dynein_C)	Dynein heavy chain C-terminal domain	This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading ove ...	This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain [3].	Domain
A, B	PF12780	P-loop containing dynein motor region D4 (AAA_8)	P-loop containing dynein motor region D4	The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...	The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor [1].	Domain
A, B	PF17852	Dynein heavy chain AAA lid domain (Dynein_AAA_lid)	Dynein heavy chain AAA lid domain	This entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain [1]. This domain is composed of 8 alpha helices [1].	Domain
A, B	PF08393	Dynein heavy chain, N-terminal region 2 (DHC_N2)	Dynein heavy chain, N-terminal region 2	-	Family
A, B	PF12777	Microtubule-binding stalk of dynein motor (MT)	Microtubule-binding stalk of dynein motor	the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...	the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [1].	Domain
A, B	PF03028	Dynein heavy chain region D6 P-loop domain (Dynein_heavy)	Dynein heavy chain region D6 P-loop domain	This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved i ...	This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains [1]. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Cytoplasmic dynein 1 heavy chain 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity cytoskeletal motor activity minus-end-directed microtubule motor activity ATP-dependent activity dynein intermediate chain binding RNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell division establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration cellular component biogenesis cellular component organization cellular process cell division establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration cellular component biogenesis cellular component organization organelle organization cellular component assembly organelle assembly P-body assembly non-membrane-bounded organelle assembly cellular component organization or biogenesis stress granule assembly microtubule cytoskeleton organization spindle localization establishment of spindle localization microtubule-based process cell cycle cytoskeleton organization cell cycle process regulation of localization regulation of biological process biological regulation metaphase chromosome alignment chromosome localization nuclear chromosome segregation regulation of metaphase plate congression establishment of chromosome localization chromosome segregation positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process positive regulation of spindle assembly positive regulation of cell cycle process regulation of cell cycle positive regulation of cellular process spindle organization regulation of cell cycle process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of organelle organization positive regulation of cell cycle regulation of spindle assembly regulation of organelle assembly regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of mitotic spindle organization mitotic cell cycle microtubule cytoskeleton organization involved in mitosis mitotic spindle organization mitotic cell cycle process cytoplasmic microtubule organization supramolecular fiber organization multicellular organismal process homeostatic process adaptive thermogenesis positive regulation of metabolic process multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process metabolic process regulation of multicellular organismal process regulation of metabolic process regulation of transport positive regulation of transport regulation of cellular localization positive regulation of intracellular transport regulation of intracellular transport retrograde axonal transport axonal transport axo-dendritic transport microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement	membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle microtubule associated complex microtubule cytoskeleton non-membrane-bounded organelle cell projection actin-based cell projection filopodium plasma membrane bounded cell projection polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex neuron projection cytoplasm axon axon cytoplasm neuron projection cytoplasmic region plasma membrane bounded cell projection cytoplasm cell periphery cell cortex centrosome microtubule organizing center lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen cytoplasmic vesicle lysosome vesicle lumen azurophil granule vacuole intracellular membrane-bounded organelle secretory granule lumen azurophil granule lumen organelle lumen secretory granule primary lysosome secretory vesicle cytoplasmic microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR026983	Dynein heavy chain	Family
A, B	IPR013602	Dynein heavy chain, linker	Domain
A, B	IPR041658	Dynein heavy chain AAA lid domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
A, B	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
A, B	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
A, B	IPR041228	Dynein heavy chain, C-terminal domain	Domain
A, B	IPR003593	AAA+ ATPase domain	Domain
A, B	IPR041466	Dynein heavy chain, AAA 5 extension domain	Domain
A, B	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
A, B	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
A, B	IPR042219	Dynein heavy chain AAA lid domain superfamily	Homologous Superfamily
A, B	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
A, B	IPR013594	Dynein heavy chain, tail	Domain
A, B	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
A, B	IPR004273	Dynein heavy chain region D6 P-loop domain	Domain
A, B	IPR024317	Dynein heavy chain, AAA module D4	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q14204	Charcot-Marie-Tooth disease intellectual disability, autosomal dominant 13 Charcot-Marie-Tooth disease axonal type 2O intellectual disability microcephaly autosomal dominant childhood-onset proximal spinal muscular atrophy without contractures peripheral neuropathy spinal muscular atrophy, type III Mental Retardation, Psychosocial motor peripheral neuropathy neurodegenerative disease peripheral nervous system disease astrocytic tumor cerebral cortical dysplasia lung cancer Charcot-Marie-Tooth disease intellectual disability, autosomal dominant 13 Charcot-Marie-Tooth disease axonal type 2O intellectual disability microcephaly autosomal dominant childhood-onset proximal spinal muscular atrophy without contractures peripheral neuropathy spinal muscular atrophy, type III Mental Retardation, Psychosocial motor peripheral neuropathy neurodegenerative disease peripheral nervous system disease astrocytic tumor cerebral cortical dysplasia lung cancer malignant mesothelioma osteosarcoma spinal muscular atrophy, type 1 thyroid gland papillary carcinoma diabetes mellitus familial nonmedullary thyroid carcinoma microlissencephaly ovarian cancer Pick disease spinal muscular atrophy juvenile dermatomyositis malignant ependymoma