2GBX
Crystal Structure of Biphenyl 2,3-Dioxygenase from Sphingomonas yanoikuyae B1 Bound to Biphenyl
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e2gbxA4 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00848 | e2gbxA3 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF00848 | ECOD (1.6) |
A | PF00355 | e2gbxA1 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: PF00355 | ECOD (1.6) |
C | F_UNCLASSIFIED | e2gbxC2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00848 | e2gbxC1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF00848 | ECOD (1.6) |
C | PF00355 | e2gbxC3 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: PF00355 | ECOD (1.6) |
E | F_UNCLASSIFIED | e2gbxE3 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF00848 | e2gbxE1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF00848 | ECOD (1.6) |
E | PF00355 | e2gbxE2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: PF00355 | ECOD (1.6) |
B | PF00866 | e2gbxB1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF00866 | ECOD (1.6) |
D | PF00866 | e2gbxD1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF00866 | ECOD (1.6) |
F | PF00866 | e2gbxF1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF00866 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00848 | Ring hydroxylating alpha subunit (catalytic domain) (Ring_hydroxyl_A) | Ring hydroxylating alpha subunit (catalytic domain) | This family is the catalytic domain of aromatic-ring- hydroxylating dioxygenase systems. The active site contains a non-heme ferrous ion coordinated by three ligands. | Domain | |
PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain | |
PF00866 | Ring hydroxylating beta subunit (Ring_hydroxyl_B) | Ring hydroxylating beta subunit | This subunit has a similar structure to NTF-2 and scytalone dehydratase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Biphenyl 2,3-Dioxygenase Alpha Subunit | - | - | ||
Biphenyl 2,3-Dioxygenase Beta Subunit | - | - |