AF_AFF2JTX5F1

COMPUTED STRUCTURE MODEL OF 23S RRNA (URACIL(1939)-C(5))-METHYLTRANSFERASE RLMD

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain

• AlphaFold DB: F2JTX5
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2025-08-01
• Organism(s): Marinomonas mediterranea MMB-1
• UniProtKB: F2JTX5

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Model Confidence 

• pLDDT (global): 93.91
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 49.16 kDa 
• Atom Count: 3,453 
• Modeled Residue Count: 435 
• Deposited Residue Count: 435 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A	435	Marinomonas mediterranea MMB-1	Mutation(s): 0  Gene Names: rlmD EC: 2.1.1.190
UniProt
Find proteins for F2JTX5 (Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1)) Explore F2JTX5  Go to UniProtKB:  F2JTX5