AF_AFD5AQI9F1

COMPUTED STRUCTURE MODEL OF RNA POLYMERASE SIGMA FACTOR RPOD

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain.

• AlphaFold DB: AF-D5AQI9-F1
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2022-09-30
• Organism(s): Rhodobacter capsulatus SB 1003
• UniProtKB: D5AQI9

---

Model Confidence 

• pLDDT (global): 79.59
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 76.06 kDa 
• Atom Count: 5,317 
• Modeled Residue Count: 674 
• Deposited Residue Count: 674 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase sigma factor RpoD	A	674	Rhodobacter capsulatus SB 1003	Mutation(s): 0  Gene Names: rpoD
UniProt
Find proteins for D5AQI9 (Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)) Explore D5AQI9  Go to UniProtKB:  D5AQI9