9S3A | pdb_00009s3a

TaGST-10 in complex with deoxynivalenol-13-glutathione


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.258 (Depositor), 0.264 (DCC) 
  • R-Value Work: 
    0.210 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 
    0.212 (Depositor) 

Starting Model: in silico
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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Detoxification of deoxynivalenol by pathogen-inducible tau-class glutathione transferases from wheat.

Michlmayr, H.Siller, M.Kenjeric, L.Doppler, M.Malachova, A.Hofer, M.Hametner, C.Schweiger, W.Steiner, B.Kugler, K.G.Mayer, K.F.X.Buerstmayr, H.Schuhmacher, R.Krska, R.Labrou, N.E.Papageorgiou, A.C.Adam, G.

(2025) J Biological Chem 301: 110600-110600

  • DOI: https://doi.org/10.1016/j.jbc.2025.110600
  • Primary Citation of Related Structures:  
    9S3A

  • PubMed Abstract: 

    Deoxynivalenol (DON) is a toxicologically relevant trichothecene mycotoxin frequently found in cereal products. It is a virulence factor produced by the plant pathogen Fusarium graminearum during cereal crop infections. Investigating plant defense mechanisms is crucial for understanding plant resistance to F. graminearum and identifying new biocatalysts for DON detoxification. Previous studies identified DON-thiol adducts in cereal samples, indicating partial DON detoxification by glutathione transferases (GSTs). DON possesses two electrophilic centers for thiol conjugation, resulting in either epoxide opening at C13 or Michael addition at C10. At present, information on plant GSTs that catalyze these reactions is limited. In this study, Fusarium-inducible wheat GSTs were identified by analyzing the transcriptome of Fusarium-infected wheat heads. Twelve highly induced genes of the tau and phi GST classes were heterologously expressed and purified, biochemically characterized with model substrates, and assayed for activity with DON. Use of liquid chromatography coupled to mass spectrometry showed that four of the selected tau class GSTs conjugated DON to glutathione (GSH) by epoxide opening (DON-13-GSH) and/or the reversible Michael addition reaction (DON-10-GSH). The crystal structure of a wheat GST (herein designated "TaGST-10") in complex with DON-13-GSH was solved at a resolution of 2.3 Å and provided insights into the binding of DON at the active site of tau class GSTs. Our results corroborate the hypothesis that enzyme-catalyzed, glutathione-mediated DON detoxification may be involved in plant response to Fusarium infection.


  • Organizational Affiliation
    • Turku Bioscience Centre, University of Turku and Åbo Akademi University, Tykistökatu 6, Turku 20520, Finland; BOKU University, Department of Agricultural Sciences, Institute of Microbial Genetics (IMiG), Konrad-Lorenz-Strasse 24, 3430 Tulln, Austria. Electronic address: herbert.michlmayr@boku.ac.at.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase
A, B
236Triticum aestivumMutation(s): 0 
Gene Names: LOC123049460
EC: 2.5.1.18
UniProt
Find proteins for A0A3B5XZG4 (Triticum aestivum)
Explore A0A3B5XZG4 
Go to UniProtKB:  A0A3B5XZG4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3B5XZG4
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1I4U (Subject of Investigation/LOI)
Query on A1I4U

Download Ideal Coordinates CCD File 
C [auth A],
N [auth B]
Deoxynivalenol-13-glutathione
C25 H37 N3 O12 S
VKIMXIOAJXZHLP-NKJUKPLDSA-N
A1I4T (Subject of Investigation/LOI)
Query on A1I4T

Download Ideal Coordinates CCD File 
D [auth A]Deoxynivalenol-13-cysteine
C18 H27 N O8 S
IKJKLXWUVIBHOJ-MTTMPXCWSA-N
TRS
Query on TRS

Download Ideal Coordinates CCD File 
M [auth A],
S [auth B]
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
GOL
Query on GOL

Download Ideal Coordinates CCD File 
E [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
ACT
Query on ACT

Download Ideal Coordinates CCD File 
F [auth A],
O [auth B],
P [auth B]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
NA
Query on NA

Download Ideal Coordinates CCD File 
G [auth A]
H [auth A]
I [auth A]
J [auth A]
K [auth A]
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
Q [auth B],
R [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.258 (Depositor), 0.264 (DCC) 
  • R-Value Work:  0.210 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 0.212 (Depositor) 
Space Group: P 21 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.408α = 90
b = 61.859β = 90
c = 168.824γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXmodel building
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaJ-4598
Austrian Science FundAustriaF3702,F3708,F3715
iNEXT-DiscoveryEuropean Union871037

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release
  • Version 1.1: 2025-09-24
    Changes: Database references