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TaGST-10 in complex with deoxynivalenol-13-glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold A0A3B5XZG4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 289 ammonium sulfate, sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.58 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.408 α = 90 b = 61.859 β = 90 c = 168.824 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9762 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 49.9 99.3 0.182 0.19 0.053 0.996 10.5 12.1 25016
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.7 0.978 1.021 0.287 0.935 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 49.9 23653 1280 98.92 0.21248 0.20997 0.2162 0.25762 0.264 RANDOM 40.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 -0.46 1.41
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.142 r_long_range_B_other 15.457 r_dihedral_angle_3_deg 14.159 r_dihedral_angle_2_deg 8.303 r_dihedral_angle_1_deg 7.222 r_scangle_other 3.205 r_mcangle_it 2.535 r_mcangle_other 2.535 r_angle_refined_deg 2.281 r_scbond_other 1.918
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.142 r_long_range_B_other 15.457 r_dihedral_angle_3_deg 14.159 r_dihedral_angle_2_deg 8.303 r_dihedral_angle_1_deg 7.222 r_scangle_other 3.205 r_mcangle_it 2.535 r_mcangle_other 2.535 r_angle_refined_deg 2.281 r_scbond_other 1.918 r_scbond_it 1.917 r_mcbond_it 1.677 r_mcbond_other 1.569 r_angle_other_deg 1.03 r_chiral_restr 0.133 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3131 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 152
Software Software Software Name Purpose REFMAC refinement PHENIX model building XDS data reduction Aimless data scaling PHASER phasing