9RS9 | pdb_00009rs9

Rab23 in complex with Fuzzy-Inturned


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned.

Wilmes, S.Tonjes, J.Drechsler, M.Ruf, A.Schafer, J.H.Lurick, A.Januliene, D.Apelt, S.Di Iorio, D.Wegner, S.V.Loose, M.Moeller, A.Paululat, A.Kummel, D.

(2025) Sci Adv 11: eadx2893-eadx2893

  • DOI: https://doi.org/10.1126/sciadv.adx2893
  • Primary Citation of Related Structures:  
    9RS6, 9RS7, 9RS8, 9RS9

  • PubMed Abstract: 

    Rab GTPases organize intracellular trafficking and provide identity to organelles. Their spatiotemporal activation by guanine nucleotide exchange factors (GEFs) is tightly controlled to ensure fidelity. Our structural and functional comparison of the tri-longin domain RabGEFs Mon1-Ccz1 and Fuzzy-Inturned reveals the molecular basis for their target specificity. Both complexes rely on a conserved sequence motif of their substrate GTPases for the catalytic mechanism, while secondary interactions allow discrimination between targets. We also find that dimeric Mon1-Ccz1 from fungi and the metazoan homologs with the additional third subunit RMC1/Bulli bind membranes through electrostatic interactions via distinct interfaces. Protein-lipid interaction studies and functional characterization in flies reveal an essential function of RMC1/Bulli as mediator of GEF complex membrane recruitment. In the case of Fuzzy-Inturned, reconstitution experiments demonstrate that the BAR (Bin-Amphiphysin-Rvs) domain protein CiBAR1 can support membrane recruitment of the GEF. Collectively, our study demonstrates the molecular basis for the adaptation of TLD-RabGEFs to different cellular functions.


  • Organizational Affiliation
    • Department of Chemistry and Pharmacy, Institute of Biochemistry, University of Münster, Münster, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein fuzzy homolog418Homo sapiensMutation(s): 0 
Gene Names: FUZFY
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BT04 (Homo sapiens)
Explore Q9BT04 
Go to UniProtKB:  Q9BT04
PHAROS:  Q9BT04
GTEx:  ENSG00000010361 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BT04
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein inturned957Homo sapiensMutation(s): 0 
Gene Names: INTUKIAA1284PDZD6PDZK6
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULD6 (Homo sapiens)
Explore Q9ULD6 
Go to UniProtKB:  Q9ULD6
PHAROS:  Q9ULD6
GTEx:  ENSG00000164066 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ULD6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ras-related protein Rab-23245Homo sapiensMutation(s): 1 
Gene Names: RAB23HSPC137
EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULC3 (Homo sapiens)
Explore Q9ULC3 
Go to UniProtKB:  Q9ULC3
PHAROS:  Q9ULC3
GTEx:  ENSG00000112210 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ULC3
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB1557-P10
German Research Foundation (DFG)GermanySFB1557-P11

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2025-09-03
    Changes: Data collection, Database references