9R0D | pdb_00009r0d

Human CD73 (ecto 5'-nucleotidase) in complex with compound 7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.255 (Depositor), 0.258 (DCC) 
  • R-Value Work: 
    0.214 (Depositor), 0.219 (DCC) 
  • R-Value Observed: 
    0.214 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Discovery of ORIC-533, an Orally Bioavailable CD73 Inhibitor That Maintains Activity in High AMP Environments to Reverse Tumor Immunosuppression.

Moore, J.T.Kawai, H.Blank, B.R.Wu, K.Yeh, C.H.Zhu, L.Pham, J.D.Rew, Y.Eksterowicz, J.Salaniwal, S.Sutimantanapi, D.Warne, R.Yuen, N.Metzger, T.C.Chan, B.Huang, T.Chen, X.Chen, Y.Duong, F.Kong, W.Chang, J.H.Sun, J.D.Zavorotinskaya, T.Ye, Q.Al-Sayah, M.A.Jackson, E.Junttila, M.R.Fantin, V.R.Ndubaku, C.O.Sun, D.Du, X.Friedman, L.S.

(2025) J Med Chem 68: 22145-22169

  • DOI: https://doi.org/10.1021/acs.jmedchem.5c02153
  • Primary Citation of Related Structures:  
    9R0D, 9R0G, 9R0H

  • PubMed Abstract: 

    Immunosuppressive adenosine (ADO) is catabolized from adenosine monophosphate (AMP) by CD73 in the tumor microenvironment and corresponds to poor patient prognosis in many cancers. Reducing levels of ADO via inhibition of CD73 may reverse this immunosuppression. Herein we describe the discovery of ORIC-533 ( 6 ), an inhibitor of CD73 with subnanomolar biochemical potency and potent cellular activity in both human and mouse tumor cell lines. Compound 6 rescues T-cell activation and cytokine production at low nanomolar concentrations, showing robust immunomodulatory activity. Notably, in high AMP environments compound 6 also promotes CD8 + T-cell proliferation. Oral dosing of 6 reduces the concentration of ADO in the tumor microenvironment with a concomitant increase in CD8 + cells, resulting in tumor growth inhibition in a syngeneic mouse model of cancer. The strong potency and oral bioavailability support a potential best-in-class profile for 6 , a CD73 inhibitor that entered phase 1b in patients with multiple myeloma.


  • Organizational Affiliation
    • ORIC Pharmaceuticals, Inc., 240 East Grand Avenue, Fl2, South San Francisco, California 94080, United States.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
5'-nucleotidase
A, B
533Homo sapiensMutation(s): 3 
Gene Names: NT5ENT5NTE
EC: 3.1.3.35 (PDB Primary Data), 3.1.3.5 (PDB Primary Data), 3.1.3.89 (PDB Primary Data), 3.1.3.91 (PDB Primary Data), 3.1.3.99 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P21589 (Homo sapiens)
Explore P21589 
Go to UniProtKB:  P21589
PHAROS:  P21589
GTEx:  ENSG00000135318 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21589
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P21589-1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1JCF (Subject of Investigation/LOI)
Query on A1JCF

Download Ideal Coordinates CCD File 
G [auth A],
M [auth B]
[[(2~{R},3~{S},4~{R},5~{R})-5-[5-chloranyl-7-[[(1~{S})-1~{H}-inden-1-yl]-methyl-amino]-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid
C20 H23 Cl N6 O9 P2
UKEIIBAXICGCEM-BPAMBQHCSA-N
NAG
Query on NAG

Download Ideal Coordinates CCD File 
F [auth A],
L [auth B]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
H [auth A],
N [auth B]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
I [auth B],
J [auth B]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
E [auth A],
K [auth B]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.255 (Depositor), 0.258 (DCC) 
  • R-Value Work:  0.214 (Depositor), 0.219 (DCC) 
  • R-Value Observed: 0.214 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 231.987α = 90
b = 94.009β = 90
c = 55.522γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
REFMACphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-12
    Type: Initial release
  • Version 1.1: 2025-11-26
    Changes: Database references