9N0B | pdb_00009n0b

Cryo-EM of spore appendage from Anaerovoracaceae


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM identifies F-ENA of Bacillus thuringiensis as a widespread family of endospore appendages across Firmicutes.

Sleutel, M.Sogues, A.Van Gerven, N.Jonsmoen, U.L.Van Molle, I.Fislage, M.Theunissen, L.D.Bellis, N.F.Baquero, D.P.Egelman, E.H.Krupovic, M.Wang, F.Aspholm, M.Remaut, H.

(2025) Nat Commun 16: 7652-7652

  • DOI: https://doi.org/10.1038/s41467-025-62896-3
  • Primary Citation of Related Structures:  
    9HZE, 9I65, 9N0B

  • PubMed Abstract: 

    For over 100 years, Bacillus thuringiensis (Bt) has been used as an agricultural biopesticide to control pests caused by insect species in the orders of Lepidoptera, Diptera, and Coleoptera. Under nutrient starvation, Bt cells differentiate into spores and associated toxin crystals that can adopt biofilm-like aggregates. We reveal that such Bt spore/toxin biofilms are embedded in a fibrous extrasporal matrix, and using cryoID, we resolved the structure and molecular identity of an uncharacterized type of pili, referred to here as Fibrillar ENdospore Appendages or F-ENA. F-ENA are monomolecular protein filaments anchored to the exosporium and tipped with a flexible fibrillum. Phylogenetic and structural analyses reveal that F-ENA are conserved in Bacilli and Clostridia, featuring head-neck domains with β-barrel necks that interlock via N-terminal hook peptides. In Bacillus, two collagen-like proteins (F-Anchor and F-BclA), respectively, tether F-ENA and form the distal tip. Sedimentation assays suggest F-ENA promotes spore clustering via F-BclA contacts and/or filament bundling.


  • Organizational Affiliation
    • Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium. Mike.Sleutel@vub.be.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
spore filament protein subunit
A, B, C, D, E
A, B, C, D, E, F, G, H, I
124Bacillota bacteriumMutation(s): 0 
UniProt
Find proteins for A0A239JBH3 (Anaerovirgula multivorans)
Explore A0A239JBH3 
Go to UniProtKB:  A0A239JBH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A239JBH3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM138756

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release